Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002213-TA|BGIBMGA002213-PA|undefined
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1107 + 34568091-34568341,34568455-34568540,34569204-345692... 33 0.41
10_08_0769 + 20452130-20453314 31 1.3
04_04_0713 + 27490547-27491401 31 1.7
11_01_0619 - 4961588-4962409 30 2.2
09_02_0468 - 9608922-9610061 30 2.9
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 30 2.9
03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124... 29 3.9
02_01_0264 - 1748883-1748888,1748943-1749017,1749453-1749868,175... 29 3.9
01_06_0523 - 30009191-30010531 29 3.9
12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551 29 5.1
06_03_0536 + 21906583-21908037 29 5.1
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 29 5.1
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 29 6.7
08_01_0172 - 1460071-1460740,1460857-1461818 29 6.7
08_01_0163 - 1333280-1333391,1334954-1335418,1335591-1336951 29 6.7
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 29 6.7
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336... 28 8.9
03_05_1166 - 30876802-30876899,30877233-30878685 28 8.9
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 28 8.9
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820 28 8.9
01_06_0238 - 27774546-27775418 28 8.9
>01_06_1107 +
34568091-34568341,34568455-34568540,34569204-34569292,
34569406-34569530,34569825-34569901,34570210-34570862
Length = 426
Score = 32.7 bits (71), Expect = 0.41
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 214 DDVSICTTDTDEIRYVPRRAGDIPGLDSLVVEPPPSSSANQSMALP 259
DDV+ + D D +R +P G + ++SL ++ P ++A + A+P
Sbjct: 344 DDVAAASVDDDVLRSLPDDVGFVDDVESLFLDAPGPAAAAAAAAMP 389
>10_08_0769 + 20452130-20453314
Length = 394
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 28 CKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEVTPEDDRNSIKNV 77
CK S D P+ D T +NT + P GT P E P D RN NV
Sbjct: 79 CKQCSRCFEQDTPLFDPTA-SNTYRAEPCGT--PLCESIPSDSRNCSGNV 125
>04_04_0713 + 27490547-27491401
Length = 284
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 185 PSGARPVAPPRKKKRNKLHGSQSLSRGEGDDVSICTTDTDEIRYVPRRAG 234
P ++P +K+KR + + G G+D S C+TD + +AG
Sbjct: 42 PKSSKPKHAAKKRKRAAAEEPANAAHGAGEDTSSCSTDDNAAASGKAQAG 91
>11_01_0619 - 4961588-4962409
Length = 273
Score = 30.3 bits (65), Expect = 2.2
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 22 SKRSSLCK--STSVTESSDVPVQDKTKITN-TDQTLPVGTSTPTAEVTPEDDRNSIKNVV 78
SKR S K S S ++SS+ V D ++ T G+S+ + ED + K
Sbjct: 169 SKRKSKRKYRSRSDSDSSEASVFDSDSESSVTGSEYSSGSSSSYSSSDSEDKKRRPKRKQ 228
Query: 79 QGRRRFQELRRCMQTEEDDEGIPELDND 106
Q RR +E +E D E D+D
Sbjct: 229 QKRRHRRETSSSASSESDSESASASDSD 256
>09_02_0468 - 9608922-9610061
Length = 379
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 186 SGARPVAPPRKKKRNKLHGSQSLSRGEGDDVSICTTDTDEIRYVPRRAGDIP 237
SG P PP S + +R G+D+S+ +DE +P ++ D P
Sbjct: 30 SGTAPAPPPPTPADRPPRASPAPARAMGEDISVHGESSDESDTIPVQSVDSP 81
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 89 RCMQTEEDDEGIPELDNDQQTYTLEHPFKVIAHDTMSLQSMTSLGR---IGRILSGAAES 145
R + ++EGIPEL+ D+ + FK +A S S R IG + S A +
Sbjct: 253 RSSREVREEEGIPELEEDED----DCVFKEVASGGYSAGSGGHRSRRSSIGSLSSVAEQE 308
Query: 146 QLLAEPDVIAST 157
+ + DV+AST
Sbjct: 309 NAVIDNDVVAST 320
>03_05_0329 -
23211636-23211857,23211946-23212079,23212170-23212476,
23212760-23213113
Length = 338
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 4 SSDSEEFYDAEEFTPTKGSKRSSLCKSTSVTESSDVPVQD 43
++D E+ + EE+ SK SS C S+S T SS D
Sbjct: 51 AADDEDEEEVEEYMDHLVSKESSFCSSSSSTSSSSCCFSD 90
>02_01_0264 -
1748883-1748888,1748943-1749017,1749453-1749868,
1750095-1750215,1750423-1750533,1750636-1750737,
1750896-1750989,1751145-1751194,1751323-1751424,
1751794-1751871,1751999-1752028,1752322-1753050
Length = 637
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/88 (20%), Positives = 37/88 (42%)
Query: 198 KRNKLHGSQSLSRGEGDDVSICTTDTDEIRYVPRRAGDIPGLDSLVVEPPPSSSANQSMA 257
K KL Q + T T + + +R GD+ + + PP A++
Sbjct: 532 KNRKLMQQQQRQLEQLPGPDTVTVSTAQYEALIKRLGDLEEKVAALTSRPPEMPADKEDL 591
Query: 258 LPSPASTIESLTREFQDSLELSQSKYGE 285
L + + +E+L E + + +L ++ G+
Sbjct: 592 LKAAVTRVEALETELESTKKLLETSSGQ 619
>01_06_0523 - 30009191-30010531
Length = 446
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 80 GRRRFQELRRCMQTEEDDEGIPELDNDQQ 108
GRRR RRC+ E D+G+ + N QQ
Sbjct: 395 GRRRAASYRRCLGFEAADDGLSVIGNVQQ 423
>12_02_0155 +
14497847-14498012,14499612-14499695,14500196-14500551
Length = 201
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 29 KSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEVTPEDD 70
KS+ + S P+Q K KI +T+ VG++ +V P+D+
Sbjct: 8 KSSKAKKGSSTPLQSKEKIAANVETVAVGSN--NRQVAPDDN 47
>06_03_0536 + 21906583-21908037
Length = 484
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 235 DIPGLDSLVVEPPPSSSANQSMALPSPASTIESLTREFQDSLELSQ 280
D GLDSLV+E S ++ +PSP+ T Q +L L +
Sbjct: 180 DRVGLDSLVLEKDEDSEMQEAKCVPSPSQPAALGTLSVQRALALQK 225
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 185 PSGARPVAPPRKKKRNKLHGSQSLSRGEGDDVSICTT-DTDEIRYVPRRAGDIPGLDSLV 243
P+G R + PP + +R S S G + + + +T + P + +P S
Sbjct: 302 PNGTRTIEPPPQMQRTSTASSIGSSEGTSEQIKVASTISLIDFSADPEPSASVPPPQSTP 361
Query: 244 VEPPPSSSANQSMALPSPA 262
+SA + +PA
Sbjct: 362 TSQQQPASAQPVQPVNAPA 380
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 7 SEEFYDAEEFTPTKGSKR--SSLCKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAE 64
SE DAE + S++ + LC+ V T T P TST T
Sbjct: 402 SEGEDDAEFSLKSSHSRQDLTELCEPDMQEHEEQVTQHHGADETKTSSDAPTMTSTETMA 461
Query: 65 VTPEDDRNSIKNVVQGRR 82
TP +++ N +QG+R
Sbjct: 462 STPAIRKSTSANKLQGKR 479
>08_01_0172 - 1460071-1460740,1460857-1461818
Length = 543
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 82 RRFQELRRCMQTEEDDEGIPELDNDQQTYTLEHPFKVIAHDTMSLQSMTSLGRIG 136
RR Q + + E+D EG P ++ + T P+ ++ + T S + LG+ G
Sbjct: 178 RRRQRKKMREEEEDDSEGDPIVEIEMGTGPRRFPYHILVNATKSFAAEEKLGQGG 232
>08_01_0163 - 1333280-1333391,1334954-1335418,1335591-1336951
Length = 645
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 82 RRFQELRRCMQTEEDDEGIPELDNDQQTYTLEHPFKVIAHDTMSLQSMTSLGRIG 136
RR Q + + E+D EG P ++ + T P+ ++ + T S + LG+ G
Sbjct: 311 RRRQRKKMREEEEDDSEGDPIVEIEMGTGPRRFPYHILVNATKSFAAEEKLGQGG 365
>07_03_1760 -
29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 7 SEEFYDAEEFTPTKGSKRSSLCK-STSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEV 65
SE+ A ++ KRSS TE SDVP DKT++ + + S EV
Sbjct: 657 SEKGCAANSSADSEVDKRSSSSSLQNRDTEMSDVPQVDKTEVVAPNTDFAIVVSHQNMEV 716
Query: 66 TPE 68
P+
Sbjct: 717 VPK 719
>05_05_0328 +
24130887-24130919,24132207-24132279,24133542-24133635,
24133924-24134037,24134121-24134169,24134364-24134873
Length = 290
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 8 EEFYDAEEFTPTKGSKRSSLCKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEVTP 67
E+F + EF P + SK S L SV + + ++ T ++N +L E+T
Sbjct: 156 EKFEENHEFPPGQFSKPSQLKVDVSVDGTDAIETKEATPLSNARASL--RNIDLNIELTD 213
Query: 68 EDDRNSIKNVVQ 79
DD S VQ
Sbjct: 214 YDDEGSAPLEVQ 225
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 3 DSSDSEEFYDAEEFTPTKGSKRSSLCKSTSVTESSDVPVQDKTKITNTDQTLPVGT 58
D+ D + AE F T G L K S++ VP DKT T+ TL +GT
Sbjct: 308 DALDDSDTGPAEMFR-TMGCSTGDLIKFVSISFDDSVPEDDKTV---TEWTLDMGT 359
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 28.3 bits (60), Expect = 8.9
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 18 PTKGSKRSSLCKSTSVTESSDVPVQDKTKITNTDQTLPVGTSTPTAEVTPEDDRNSIKNV 77
PT S RSS K TE S+ P +D ++ + P T R + +
Sbjct: 270 PTSTSNRSSKRKRLDTTEDSESPSEDA-----ESESAALARKPPAKMTTARRSRAAEVHN 324
Query: 78 VQGRRRFQELRRCMQTEEDDEGIPELDNDQQTYTLEHPFKVIAHDTMSLQSM 129
+ RRR + M+ + E IP + + L+ + + + LQ M
Sbjct: 325 LSERRRRDRINEKMRALQ--ELIPHCNKTDKASMLDEAIEYLKSLQLQLQMM 374
>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
Length = 292
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 219 CTTDTDEIRYVPRRAGDIPGLDSLVVEPPPSSSANQ-SMALPSP 261
C T T+E R + R ++ L PPPSS+A+Q S A P+P
Sbjct: 195 CETLTEENRRLQRELQELRALK--FAPPPPSSAAHQPSPAPPAP 236
>01_06_0238 - 27774546-27775418
Length = 290
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 246 PPPSSSANQSMALPSPASTIESLTRE 271
PP +++AN+SMA P P +T +S T E
Sbjct: 169 PPAAAAANKSMAAPPPTAT-KSKTEE 193
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.307 0.125 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,986,206
Number of Sequences: 37544
Number of extensions: 354209
Number of successful extensions: 1204
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 24
length of query: 326
length of database: 14,793,348
effective HSP length: 82
effective length of query: 244
effective length of database: 11,714,740
effective search space: 2858396560
effective search space used: 2858396560
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 60 (28.3 bits)
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