GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002211-TA|BGIBMGA002211-PA|IPR012335|Thioredoxin fold,
IPR010987|Glutathione S-transferase, C-terminal-like,
IPR004046|Glutathione S-transferase, C-terminal,
IPR012336|Thioredoxin-like fold, IPR004045|Glutathione S-transferase,
N-terminal
         (220 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   1.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   1.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   1.4  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   2.5  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   2.5  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 46  LKLNPQHTVPTIVDEGFPLWESRAISRYLVNKYGGDSSSLYPKDLMAR 93
           ++++P +    +     P WE      Y++N   GD ++L   D+++R
Sbjct: 56  VQISPPNENLVVTSSNRPWWERYQPVSYILNTRSGDEAAL--ADMISR 101


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 46  LKLNPQHTVPTIVDEGFPLWESRAISRYLVNKYGGDSSSLYPKDLMAR 93
           ++++P +    +     P WE      Y++N   GD ++L   D+++R
Sbjct: 57  VQISPPNENLVVTSSNRPWWERYQPVSYILNTRSGDETAL--ADMISR 102


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 46  LKLNPQHTVPTIVDEGFPLWESRAISRYLVNKYGGDSSSLYPKDLMAR 93
           ++++P +    +     P WE      Y++N   GD ++L   D+++R
Sbjct: 57  VQISPPNENLVVTSSNRPWWERYQPVSYILNTRSGDEAAL--ADMISR 102


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 139 FLNAFLEGQKYVTGDVLTIADLSLVATISTIDA--AEISLKSYPNVEKWFELMKT 191
           FL  FLE  + +    L  AD+  + T+   +    ++++ ++ ++  W  L+ T
Sbjct: 232 FLQLFLEHYEVINRQTLDTADVKTLTTVVEKECYKMKVTIDAFNDIFGWSFLLFT 286


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 139 FLNAFLEGQKYVTGDVLTIADLSLVATISTIDA--AEISLKSYPNVEKWFELMKT 191
           FL  FLE  + +    L  AD+  + T+   +    ++++ ++ ++  W  L+ T
Sbjct: 158 FLQLFLEHYEVINRQTLDTADVKTLTTVVEKECYKMKVTIDAFNDIFGWSFLLFT 212


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,415
Number of Sequences: 317
Number of extensions: 1578
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 220
length of database: 114,650
effective HSP length: 54
effective length of query: 166
effective length of database: 97,532
effective search space: 16190312
effective search space used: 16190312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)