GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002211-TA|BGIBMGA002211-PA|IPR012335|Thioredoxin fold,
IPR010987|Glutathione S-transferase, C-terminal-like,
IPR004046|Glutathione S-transferase, C-terminal,
IPR012336|Thioredoxin-like fold, IPR004045|Glutathione S-transferase,
N-terminal
         (220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    43   3e-05
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    42   7e-05
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    41   2e-04
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    39   7e-04
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    30   0.31 
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    29   0.71 
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    27   2.9  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    26   3.8  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   5.0  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    26   5.0  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   6.6  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   8.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   8.8  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 45  FLKLNPQHTVPTIVDEGFPLWESRAISRYLVNKYG-------GDSSSLYPKD-------- 89
           + KL+P    P +VD+G    ES AI  +LV KYG        D + L   +        
Sbjct: 42  YTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFSEA 101

Query: 90  -LMARALVDQRLDFDIGTLYPRFAQYFYPQVFGGAKPDXXXXXXXXXXXVFLNAFLEGQK 148
            LM        LD  +  + P F +Y   Q   G K              +++  L   +
Sbjct: 102 SLMPFIWASHVLDLSV-NMTPIFFRYIVRQFVNGIKSKYLSKETFLNLD-YIDNHLASNE 159

Query: 149 YVTGDVLTIADLSLVATISTIDAAEISLKSYPNVEKWFELM 189
           Y  G+  T AD  +   I       +S K Y N+++W  ++
Sbjct: 160 YFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV 200


>SPCC191.09c |gst1||glutathione S-transferase
          Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 37 EREQLQADFLKLNPQHTVPTIVDE---GFPLWESRAISRYLVNKYGGDSSSLYPKD 89
          + EQ   + L LNP   VPT++D     + +WES AI  YL +KY  +     P+D
Sbjct: 38 KNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRD 93


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 45/175 (25%), Positives = 66/175 (37%), Gaps = 9/175 (5%)

Query: 43  ADFLKLNPQHTVPTIVD-EGFPLWESRAISRYLVNKYGGDSSSLYPKDLMARALVDQRLD 101
           AD     P   +P  V  +GFPL E+ AI+ YL +     + +L       +A V Q   
Sbjct: 41  ADLAAKFPLQKMPVFVGKDGFPLSETLAIAFYLASL--NKTRALNGTTAEEKAKVLQYCS 98

Query: 102 FDIGTLYPRFAQYFYPQVFGGAKPDXXXXXXXXXXXVFLNAF---LEGQKYVTGDVLTIA 158
           F    L   F     P+VFG    +           +    F   L  + Y+ G  LT+A
Sbjct: 99  FTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLA 158

Query: 159 DLSLVATISTIDAAEISLKSYPNVEKWFELMKTTAPDYQNANQKGIDEFKKLIAQ 213
           D+     +    A  +  KSY  + K+  + +     Y  A    I E  K I Q
Sbjct: 159 DIFFTCFLK-FGATYVLTKSY--LAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQ 210


>SPCC965.07c |gst2||glutathione S-transferase
          Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 39 EQLQADFLKLNPQHTVPTIVDE---GFPLWESRAISRYLVNKYGGD 81
          EQ   + L LNP   VPT+VD     + +WES AI  YL +KY  D
Sbjct: 40 EQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKYDTD 85


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 163 VATISTIDAAEISLKSYP-NVEKWFELMKTTAPDYQNANQKGIDEF 207
           +  I T  A  +SL+S+P N+E++F  +  +A +  +A    ID+F
Sbjct: 186 IILIVTAIAVALSLESFPSNIERYFSAVNHSAIELSDALNSKIDDF 231


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 113 QYFYPQVFGGAKPDXXXXXXXXXXXVFLNAFLEGQKYVTGDVL-TIADLSLVATISTIDA 171
           Q+  P++FG  K                N   E     TG+++  +AD+S+  T   I A
Sbjct: 4   QFKRPELFGFDKSHAQSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISA 63

Query: 172 AEISLKSYPN---------VEKWFELMKTTAPD 195
           A  + K+Y N         +E+W EL+     D
Sbjct: 64  ANEAFKTYKNFTHVQRSQLLERWAELIMENKDD 96


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 103 DIGTLYPRFAQYFYPQVFGGAKPDXXXXXXXXXXXVFLNAFLEGQKYVTGDVLTIADLSL 162
           D   L  +F Q++Y Q F   +              F  A L+G K +   ++++    +
Sbjct: 3   DYNALATQFTQFYY-QTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRV 61

Query: 163 VATISTIDA 171
              IST+DA
Sbjct: 62  QHRISTLDA 70


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 12/161 (7%)

Query: 40  QLQADFLKLNPQHTVPTIVD-EGFPLWESRAISRYLVNK-YGGDSSSLYPKDLMARALVD 97
           +  AD     P   +P  +  +GF L E  AI +Y   K    D   L P + +  A + 
Sbjct: 38  KFSADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEML 97

Query: 98  QRL---DFDIGT---LYPRFAQYFYPQVFGGAKPDXXXXXXXXXXXVFLNAFLEGQKYVT 151
           + +   +FDI T   + P +   F   +    KP               N  ++ + Y+ 
Sbjct: 98  KWMCFINFDIVTPQNVRP-WVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLV 156

Query: 152 GDVLTIADL---SLVATISTIDAAEISLKSYPNVEKWFELM 189
           GD  T+ADL   SL+         E + K  P++ +++  M
Sbjct: 157 GDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITM 197


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 138 VFLNAFLEGQKYVTGDVLTIADLSLVATISTIDAAEISLKSYPNVEKWFELMKTTAPDYQ 197
           V ++A   G   +   +L   ++ ++AT ST     I++K+   +   +E +     DY 
Sbjct: 144 VVVHAAAGGVGLLLCQMLRARNVHVIATASTAAKRRIAIKNGAEIACSYEDLTKVVADYT 203

Query: 198 NANQKGID 205
           N   KG+D
Sbjct: 204 NG--KGVD 209


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 79  GGDSSSLYPKDLMARALVDQRLDFDIGTL 107
           GGD + L+   L AR+ +   L F +GTL
Sbjct: 132 GGDGTILHAASLFARSGMPPILSFSLGTL 160


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 144 LEGQKYVTGDVLTIADLSLVATISTIDAAEISLKSYPNVEKWFELMKTTAPDYQNAN 200
           L G   +    + + DL   A I  +  A + +   P VE W    K  A DY+ ++
Sbjct: 169 LGGPGLIPLSFIQLRDLKTGAVIKDVSEAVLRISCIPRVEDW----KRAAADYKKSS 221


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 51 QHTVPTIVDEGFP 63
          +HT P + DEGFP
Sbjct: 32 EHTDPAVADEGFP 44


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 176 LKSYPNVEKWFELMKTTAP 194
           L+ YPN+ KW  L K   P
Sbjct: 429 LERYPNLSKWLSLRKLLDP 447


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,333
Number of Sequences: 5004
Number of extensions: 30324
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 16
length of query: 220
length of database: 2,362,478
effective HSP length: 70
effective length of query: 150
effective length of database: 2,012,198
effective search space: 301829700
effective search space used: 301829700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)