GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002211-TA|BGIBMGA002211-PA|IPR012335|Thioredoxin fold,
IPR010987|Glutathione S-transferase, C-terminal-like,
IPR004046|Glutathione S-transferase, C-terminal,
IPR012336|Thioredoxin-like fold, IPR004045|Glutathione S-transferase,
N-terminal
         (220 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.98 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   5.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   5.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 58   VDEGFPLWESRAISRYLVNKYGGDSSSLYPKDLMARALVDQRLDFDIGTLYPRFAQ 113
            ++ G P  + RA++     +    S    P+ + ++AL+DQ       T  PR AQ
Sbjct: 1292 LETGIPR-DQRAMTEARNQQQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQ 1346


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 177 KSYPNVEKWFELMK 190
           KS P V +WF+L K
Sbjct: 148 KSKPKVYQWFDLRK 161


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 177 KSYPNVEKWFELMK 190
           KS P V +WF+L K
Sbjct: 153 KSKPKVYQWFDLRK 166


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/42 (21%), Positives = 23/42 (54%)

Query: 177 KSYPNVEKWFELMKTTAPDYQNANQKGIDEFKKLIAQMKAKT 218
           KSY N  ++ +  +T+   +++  ++   +  K+I+ +  KT
Sbjct: 281 KSYKNEREYRKYRETSKERFRDRRERERSKESKIISSLSNKT 322


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 177 KSYPNVEKWFELMK 190
           KS P V +WF+L K
Sbjct: 153 KSKPKVYQWFDLRK 166


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 52   HTVPTIVDEGFPLWESRAISRYLVNKYGGDSSSLYPKDLMARALVDQRL 100
            +T  T+V + +    S  +S  L+ +   D  S+ P+D+   AL  Q L
Sbjct: 1080 YTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIPPEDVRCAALTSQSL 1128


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 52   HTVPTIVDEGFPLWESRAISRYLVNKYGGDSSSLYPKDLMARALVDQRL 100
            +T  T+V + +    S  +S  L+ +   D  S+ P+D+   AL  Q L
Sbjct: 1076 YTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPSIPPEDVRCAALTSQSL 1124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,330
Number of Sequences: 429
Number of extensions: 1814
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 220
length of database: 140,377
effective HSP length: 55
effective length of query: 165
effective length of database: 116,782
effective search space: 19269030
effective search space used: 19269030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)