GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002210-TA|BGIBMGA002210-PA|IPR006612|Zinc finger,
C2CH-type
         (363 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   2.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.4  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   4.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.0  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   6.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   7.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   7.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   7.9  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 116 EVQAVPSDSMPASSSQHSSLEKMDV 140
           E++ +  D+M    ++HS LEK D+
Sbjct: 56  ELKTLILDAMKKDPARHSKLEKADI 80


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 92   LRDEILFQFLQLNS 105
            LRD+++F FL LNS
Sbjct: 1221 LRDKMVFTFLMLNS 1234


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 92   LRDEILFQFLQLNS 105
            LRD+++F FL LNS
Sbjct: 1221 LRDKMVFTFLMLNS 1234


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 52  HMLHDLKHVCEVH 64
           + LH + H+CE+H
Sbjct: 108 YWLHQICHICELH 120


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 5/27 (18%), Positives = 17/27 (62%)

Query: 37  WVKIVGKEDLAYLQVHMLHDLKHVCEV 63
           W+ +V +E + +L++   +++ + C +
Sbjct: 312 WIILVPEEQVYHLEIEKYYNILYFCRI 338


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 116 EVQAVPSDSMPASSSQHSSLEKMDVTPQGQ 145
           + + VP   MP      + + K D+ P G+
Sbjct: 406 KAKIVPGTYMPFGVGPRNCIAKFDIVPNGK 435


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 53  MLHDLKHVCEVHFSRRDFTKSKKRLKKRAVPKLNLTP 89
           +LHD + +CE   ++   T S   L+  A    N+TP
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNILQNLADITPNVTP 141


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 53  MLHDLKHVCEVHFSRRDFTKSKKRLKKRAVPKLNLTP 89
           +LHD + +CE   ++   T S   L+  A    N+TP
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNILQNLADITPNVTP 141


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 53  MLHDLKHVCEVHFSRRDFTKSKKRLKKRAVPKLNLTP 89
           +LHD + +CE   ++   T S   L+  A    N+TP
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNILQNLADITPNVTP 141


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,194
Number of Sequences: 317
Number of extensions: 3281
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 363
length of database: 114,650
effective HSP length: 58
effective length of query: 305
effective length of database: 96,264
effective search space: 29360520
effective search space used: 29360520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)