Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002210-TA|BGIBMGA002210-PA|IPR006612|Zinc finger,
C2CH-type
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 36 0.009
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 31 0.19
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 29 1.0
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 29 1.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 2.4
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 3.1
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 4.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.5
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 5.5
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 5.5
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 5.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 5.5
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 7.2
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 26 7.2
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 26 7.2
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 7.2
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 26 9.6
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 9.6
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 26 9.6
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 9.6
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 35.9 bits (79), Expect = 0.009
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 10/167 (5%)
Query: 172 TRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKE 231
T SQ +S + KRK + RKR L EL+ T AS+ +S + +L + ++K
Sbjct: 43 TASQNNDSAKR-EKRKKQRQKQKERKRAKLLELQDTN---ASIIQSPDTLSDLLNNYIKS 98
Query: 232 IVTSALKNQKRKSQGKRWTIKNKISALAIFKRSPKAYRYLRYLAPFPSI--KTMQKLMTK 289
I + + K I++ IS F + Y Y+ P K +Q +
Sbjct: 99 IYSDLTDVELSDKVIKASYIEDTIS----FSKPKTVDNYPEYIQHLPGFTKKVVQNSNPE 154
Query: 290 IPVEPDLNTAVLDYLKKLAPIKKIRAKLCSVVFNEIALKERLTYSEA 336
I V +D LK ++ K+ + I L+E + Y +A
Sbjct: 155 ILVLCISALRAIDVLKPTKSLQNKNFKVAKLFGKHIRLEEHINYCKA 201
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 31.5 bits (68), Expect = 0.19
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 113 GQFEVQAVPSDSMPASSSQHSSLEKMDVTPQG 144
G +VQ +P D +P SSS ++ ++ ++P G
Sbjct: 71 GSVKVQEIPQDQLPKSSSDNAVTDRKTISPSG 102
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 167 EKNVTTRSQQKESESQIRKRKLEDVDVTPRKRKL 200
EK QQK+ + +++KRKLE+ + ++KL
Sbjct: 37 EKKYLQEKQQKDEQRELKKRKLEEERLKYEEKKL 70
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 29.1 bits (62), Expect = 1.0
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 134 SLEKMDVTPQGQFEVQAVPXXXXXXXXXXXXXLEKNVTTRSQQKESESQIRKRKLEDVDV 193
+LE T ++ + V + + +S Q S Q RKL +
Sbjct: 243 TLEPKFTTNTAKYANELVSCSMLDSSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQL 302
Query: 194 TPRKRKLLSELRKTKCTLASLKKSAKLIDNL 224
T R+ L +RK + + + KK+ + +NL
Sbjct: 303 TLRQSSLFDRVRKKQKAMEA-KKAEEFKNNL 332
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 71 TKSKKRLKKRAVPK----LNLTPPPLRDEILFQFLQLNSQADVTPQGQ-FEVQAVPSDSM 125
T S K++ +P + T P + + FL +++ + F+V +VP S
Sbjct: 409 TSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYEHSEPFKVSSVPLTSN 468
Query: 126 PASSSQHSSLEKMDVTP 142
SS HSS + +TP
Sbjct: 469 NFSSISHSSASSLPITP 485
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 167 EKNVTTR-SQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDN 223
EK+ R S +KESE +L D++ K ++ SEL ++K LAS + +L +N
Sbjct: 1560 EKSAVKRLSTEKESEILQFNSRLADLEY--HKSQVESELGRSKLKLASTTEELQLAEN 1615
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 166 LEKNVTTRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKK-SAKLIDNL 224
L ++ S+Q E E + KRKL+D V+ +L + KC++ + ++ ++I
Sbjct: 585 LSSSIDILSKQDE-EHEKEKRKLKDTGVSTSAEELKTFRAMCKCSVCNFERWKDRIISLC 643
Query: 225 SSEFLKEIVTSALKNQKRK 243
F + + ++ ++R+
Sbjct: 644 GHGFCYQCIQKRIETRQRR 662
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 16 RHLNEKRFFARFPLDVNRCKEWVKIVGKEDLAYLQVHMLHDLKHVCEVHF 65
R +N K PL++N K W K+V D+ +L + + +F
Sbjct: 93 RRINTKYGAVNVPLEINPFKSWAKLVDCGDIPVTTYDILKAMDQLESAYF 142
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.1 bits (57), Expect = 4.1
Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 16/210 (7%)
Query: 103 LNSQADVTPQGQFEVQAVPSDSMPASSSQHSSLEKMDVTPQGQFEVQAVPXXXXXXXXXX 162
+N Q PQ Q + QA P+ SS + Q QA P
Sbjct: 731 INQQQQPQPQSQQQQQASQFPQAPSVSSNVRPINGSIPNAQPSVPGQAQPAAKANSVGNT 790
Query: 163 XXXLEKNVTTRS--------QQKES-ESQIRKRKL--EDVDVTPRKRKLLSELRKTKCTL 211
++ + +S Q K+ SQ+ K L ED+ + P K+K + L +
Sbjct: 791 SFPVDSKLAFQSLDVSQPDLQAKQKIASQVMKHGLKPEDLKLPPSKKKKIENLSTVQKPK 850
Query: 212 ASLKKSAKLIDNLSSEFLKEIVTSALKNQKRKSQGKRWTIKN----KISALAIFKRSPKA 267
S+ + +I + E + + ++ ++ + I N I A +
Sbjct: 851 DSVVNTPDVIMSSVDEIPSSVSPGTIAKEEGMAKAREEAIANPLKYAIDAFVAVDHEEEV 910
Query: 268 YRYLRYLAPFPSIKTMQKLMTKIPVEPDLN 297
P +KT Q P PDL+
Sbjct: 911 SAIKSSQTPSSILKTPQSFFIP-PSTPDLS 939
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 228 FLKEIVTSALKNQKRKSQGKRWTIKNKISAL 258
FLK I TS QKR Q +W +++AL
Sbjct: 1842 FLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL 1872
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 5.5
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 45 DLAYLQVHMLHDLKHVCEVHFSRRDFTKSKKR--LKKRAVPKLNLTPPPLRDEILFQFLQ 102
D VH L+ + E+ F R F+K KK KR LT PP DEI F
Sbjct: 49 DCFSFNVHELNQSDEILEIDF--RFFSKKKKNEHFSKRRKLSKVLT-PPTNDEIKF---- 101
Query: 103 LNSQADVTPQGQF 115
+N PQ F
Sbjct: 102 VNRHTGSKPQPNF 114
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 5.5
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 178 ESESQIRKRKLEDVD-----VTPRKRKLLSELRKTKC---TLASLKKSAKLID---NLSS 226
E S++ K+ L+D+ ++ + R LLSEL K+K +LA+L+ K ++ NL +
Sbjct: 705 EEHSKLTKQ-LDDIKNQFGIISSKNRDLLSELEKSKSLNNSLAALESKNKKLENDLNLLT 763
Query: 227 EFL--KEIVTSALKNQKRKSQ 245
E L K T + KN R+++
Sbjct: 764 EKLNKKNADTESFKNTIREAE 784
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 211 LASLKKSAKLIDNLSSEFLKEIVTSALKNQKRKSQGKRWTIKNKISALAIFKRSP 265
+ SL K+ ++ + E + L+N RKS K + +I++L + KR P
Sbjct: 183 VGSLDKAGGPLNQQNENLSAESDNTILQNGTRKSSVKMSDLGKRIASLPVVKRPP 237
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 5.5
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
Query: 116 EVQAVPSDSMPASSSQHSSLEKMDVTPQGQFEVQAVPXXXXXXXXXXXXXLEKNVTTRSQ 175
E+Q V +D + S Q +SLEK ++ Q V E N+ ++
Sbjct: 212 ELQGV-NDKL-LSLHQEASLEKSQLSSQLSDAVLEKDALQRKVSSLSQQFTESNLRYQNI 269
Query: 176 QKESESQIRKRKLEDVDVTPR--KRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIV 233
E ++ + V +K +SEL KC SL+ N E L E
Sbjct: 270 VAELSEMRKQYEFSQVSFEKEISSQKQISELWMEKCEDCSLRLKELQNSNGELEKLLEAA 329
Query: 234 TSALKNQKRKSQGKRWTIKNKISAL 258
S+ + Q + ++K++I+ L
Sbjct: 330 QSSFEEQLESHKEAEASLKSQINFL 354
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 92 LRDEILFQFLQLNSQADVTPQGQFEVQAVPSDSMPASSSQHSSLEKMD 139
L +LF+ LN VT Q + + ++ D S H S+ +D
Sbjct: 393 LNSNLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSLD 440
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 120 VPSDSMPASSSQHSSLEKMDVTPQGQFEVQAVPXXXXXXXXXXXXXLEKNVTTRSQQK 177
V SDS+P ++S H+ + + + P + E + RS+QK
Sbjct: 14 VVSDSLPIANSTHTLEDTLKLRPDWTIALSQHETETRSTRTSCSTTTESTIAMRSKQK 71
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 26.2 bits (55), Expect = 7.2
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 224 LSSEFLKEIVTSALKNQKRKSQGKRWTIKNKISALAIFKRSPKAYRY----LRYLAPFPS 279
L++EFL + V S + K RW I L + + A + +RYL FP
Sbjct: 3 LNAEFLSQ-VPSFISPLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPR 61
Query: 280 IKTMQKLM---TKI-PVEPDLNTAVLDYLKKLA 308
+K +Q L+ +I + PD+ VL LK L+
Sbjct: 62 MKRLQTLLCGNNRITAIAPDIG-KVLPNLKTLS 93
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 26.2 bits (55), Expect = 7.2
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 168 KNVTTRSQQKESESQIRKRKLEDVD------VTPRKRKLLSELRKTKCTLASLKKSA--- 218
K + QQK + QIRK LE ++ V KL++E+ KTK +L K+A
Sbjct: 83 KQESVSFQQKRTFLQIRKY-LETIEENEFDKVRKSSDKLINEIEKTKSSLREDVKTALSE 141
Query: 219 -KLIDNLSSEFLKEIVTSALKN 239
+L NL +K+ TS N
Sbjct: 142 VRLNLNLEKGRMKDAATSRNTN 163
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 168 KNVTTRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTL 211
+N+ + +++E S+ KRKL+DV+ +++L E R + +L
Sbjct: 141 RNLVKKVEKRELHSRPPKRKLDDVE----SKQILKEARASDASL 180
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 9.6
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 167 EKNVTTRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSS 226
E V SQ +QI+ K +++++ +K+ SEL +T L S KK + +
Sbjct: 242 ESKVANNSQN----NQIKTLKAQNLNIHKNFQKIQSELIQTNSGLYSTKKELSALQVRYA 297
Query: 227 EFLKEIVTSALKNQKRKSQGKRWT-IKNKISALAI 260
L++ K ++ R + +N I LA+
Sbjct: 298 TLLRKFTDQTKKIEELSLAASRSSENENTIRRLAL 332
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 175 QQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIVT 234
+++E +++ + D D+ R+R+ L K + L++ + + S+ ++
Sbjct: 81 KRREEAFNFQRKSMVD-DLRERERQFYDSLEKKENERDRLQEKLRALQEESANLRRQREN 139
Query: 235 SALKNQKRKSQGKRWTIKNKISAL 258
+ Q++ + K+ T +KIS L
Sbjct: 140 RLREEQEQSKRRKQETPSSKISEL 163
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 9.6
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 198 RKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIVTSALKNQKRKS----QGKRWTIKN 253
+KL ++ +K+K T +K + N + L T + K+QK ++ + K
Sbjct: 29 KKLATKPQKSKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSK 88
Query: 254 KISALAIFKRSPKAYRYLRYLAPFPSIKTMQKLMTKIPVEPDLNTAVLDYLK 305
K + K +PK ++ + S K +KL+ K P E + T V D K
Sbjct: 89 KEPVVVPKKGTPKIFQENHKVKKVKSPK-KEKLVGKNPAEKEDTTDVEDTQK 139
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,180
Number of Sequences: 5004
Number of extensions: 64611
Number of successful extensions: 249
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 26
length of query: 363
length of database: 2,362,478
effective HSP length: 74
effective length of query: 289
effective length of database: 1,992,182
effective search space: 575740598
effective search space used: 575740598
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -