Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002210-TA|BGIBMGA002210-PA|IPR006612|Zinc finger,
C2CH-type
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 33 0.27
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 33 0.36
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 32 0.83
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 32 0.83
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 31 1.1
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318 31 1.9
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 30 2.5
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.5
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 30 3.3
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 29 5.8
05_01_0488 - 4070506-4072277,4072455-4072557 29 5.8
03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545... 29 5.8
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 29 5.8
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 29 5.8
02_05_0758 + 31541991-31543139 29 5.8
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 7.7
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 33.5 bits (73), Expect = 0.27
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 174 SQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIV 233
+Q+KE+E + +++LE ++ R L EL+ TK L++ I + + ++++EI
Sbjct: 1363 NQRKETERTLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEIT 1422
Query: 234 TSALKNQKRKSQGKRWTIKNKISALAIFKR 263
+ Q+ + K++ K K+ LA+ +R
Sbjct: 1423 EYFI--QESCEEAKKFQ-KIKMDLLAMLQR 1449
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 33.1 bits (72), Expect = 0.36
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 126 PASSSQHSSLEKMDVTPQGQFEVQAVPXXXXXXXXXXXXXLEKNVTTRSQQKESESQIRK 185
P+ SS + E + P + +++ +++ TT S +S +K
Sbjct: 577 PSKSSTEENDEMSKLPPAQRKKLRQKQKKAEARAKREAEEKQEDETTSSHTSKSG---KK 633
Query: 186 RKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIVTS-ALKNQKRKS 244
+ VD+ P KL+ + + LA K KL+ N SS+ L+ S L +K+K
Sbjct: 634 QNARPVDLDPHGEKLV----QIENPLAEGTKYLKLLQNNSSDSLETHTLSFELNMRKQKI 689
Query: 245 QGKRWTIKNKISALAIFKRSPKAYRYL-RYL-----APFPSIKTMQKLMTKIPVE-PDLN 297
+K I + + SP ++R L R+ P P + + + + E PDL
Sbjct: 690 LLAFQAVKQLIK---LDENSPDSHRCLIRFFHKINNLPSPGTDSEKLIWNVLEAERPDLR 746
Query: 298 TAVLDYLKKLAPIKKIRA 315
A + + L P KK+ A
Sbjct: 747 AAAAEMMYLLEPDKKLEA 764
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 31.9 bits (69), Expect = 0.83
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 66 SRRDFTKSKKRLKKRAVPKLNLTPPPLRDEILFQFLQLNSQADVTPQGQFEVQAVPSDSM 125
+RR+ K ++ +R P L+L P + + Q + P G A PS S
Sbjct: 173 NRREAAK-QEAAARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSAFPSFST 231
Query: 126 PASSSQHSSLEKMDVTP 142
PAS+ SSL TP
Sbjct: 232 PASAPSSSSLFSTPTTP 248
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 31.9 bits (69), Expect = 0.83
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 177 KESESQIR-KRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIVTS 235
KE +S+I KRKL + DV +L+ E ++ T+ASLKK +++ ++ + L++I +
Sbjct: 279 KEEKSKIEEKRKLGEQDVA----RLMKEKEISENTIASLKKEMEVMTSMHEQQLQKIELT 334
Query: 236 A 236
A
Sbjct: 335 A 335
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 31.5 bits (68), Expect = 1.1
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLK-KSAKLIDNLSSEFLKE 231
R + K+SE R ++ + K KLLS+L T +L L+ K A L DN S ++
Sbjct: 1670 RVKYKDSEESSRSYLADNTALLAEKHKLLSQLESTAVSLKFLEDKHADLRDNHGSLLSEK 1729
Query: 232 IVTSALKNQKRKSQGKRWTIKNK 254
++ L NQ + Q + IKN+
Sbjct: 1730 VL---LCNQVKNMQ-DQLGIKNE 1748
>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
Length = 878
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 RCKEWVKIVGKEDLAYLQVHMLHDLKHVCEVHFSRR 68
R ++ + V D+AY +HDL+ C HF RR
Sbjct: 536 RHEKHYRYVSSHDVAYWSKSYIHDLERSCRDHFRRR 571
>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 30.3 bits (65), Expect = 2.5
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 3 DTHRTCEVCGIKERHLNEKRFFARFPLDVNRCKEWVKIVGKEDLAYLQVHM--LHDLKHV 60
+ H E+ K+R + EK+ + L++ EWV+ E + L LHD H
Sbjct: 1120 NAHLRSELKAEKDRFVREKKELSEQMLEMENQLEWVRSEKDEQIVKLTADKKNLHDRLHE 1179
Query: 61 CEVHFSRRDFTKSKKRLKK 79
E S+ K ++ LKK
Sbjct: 1180 AETQLSQFKAWK-REELKK 1197
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.3 bits (65), Expect = 2.5
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 168 KNVTTRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRK--TKCTLASLKKSAKLIDNLS 225
KNV QQKE E +I K+K ED ++ +K +L ++ +K K + + ID
Sbjct: 1949 KNVNLDQQQKEDE-EIEKQK-EDEEIEKQKEELQTDEQKHDDKRVDFIIDTQVESIDAFQ 2006
Query: 226 SEFLKEIVTSALKNQ 240
+E +VT L ++
Sbjct: 2007 AEQTDSVVTEMLNDE 2021
>10_07_0061 +
12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 40 IVGKEDLAYLQVHMLHDLKHVCEVHFSRRDFTKSKKRLKKRAVPKLNLTPPPLRDEI 96
+V K L +++ D+ + + +S RDF +++ R+ K P L L P P D +
Sbjct: 164 VVNKVRLQMTFENVVRDIPRLSDDSWSYRDFMEAEARIVKVLQPALCLDPTPKLDRL 220
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 105 SQADVTPQGQFEVQAVPSDSMPASSSQHSSLEK 137
+Q P G F+ PS PASS QH +++
Sbjct: 300 NQGSGQPFGSFQAPRFPSSKSPASSVQHRDIDR 332
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 29.1 bits (62), Expect = 5.8
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 169 NVTTRSQQ-KESESQIRKRKLEDVDVTPRK---RKLLSELRKTKCTLASLKKSAKLIDNL 224
++TTR ++ K+ + Q+ + +LE + + RK LSEL C L + KL+ +
Sbjct: 524 DITTRDEKMKQMDDQLNQLQLEHSKLMAQADLARKSLSELHARVCELEKEVEMQKLVISE 583
Query: 225 SSEFLKEIV 233
S+E +E +
Sbjct: 584 SAEGKREAI 592
>03_06_0644 +
35253858-35254112,35254301-35254390,35254475-35254596,
35254731-35254830,35254955-35255001,35255178-35255256,
35255722-35255769
Length = 246
Score = 29.1 bits (62), Expect = 5.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 267 AYRYLRYLAPFPSIKTMQKLMTKIPVEPDLNTAVLDYLKKLAPIKKIRAKLCSVVFNEIA 326
A R L P + T+ L P NT VLDY + L P+ + + S+ NE+A
Sbjct: 170 AKRMADLLRPDGELITLMYLAEGQEAGPPFNTTVLDYKEVLNPLGLV---ITSIEDNEVA 226
Query: 327 LKER 330
++ R
Sbjct: 227 VEPR 230
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 29.1 bits (62), Expect = 5.8
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 167 EKNVTTRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSS 226
E VT+ + +E E+Q++ +L + + KL +LRK K L K + + S
Sbjct: 410 ENLVTSEKKARELEAQLQDEQLVSANNQKKSDKLEMDLRKVKKELEHEKAAREEAWAKVS 469
Query: 227 EFLKEIVTSA--LKNQKRKSQGKRWTIKNKISALAIFKRSPKAYRYLRYLAPFPSIKTMQ 284
EI + L +K++ QG R I + + L F + + L + +K MQ
Sbjct: 470 ALELEIAATIRDLSIEKQRYQGARERIILRETQLRAFYSTTEEISSL-FAKQQEQLKAMQ 528
Query: 285 KLM 287
+ +
Sbjct: 529 RTL 531
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 33 RCKEWVKIVGKEDLAYLQVHMLHDLKHVCEVHFSRR 68
R ++ K V D+AY DL+ C+ HFSRR
Sbjct: 506 RHEKHYKYVSTHDVAYWAKSFDQDLQRACKDHFSRR 541
>02_05_0758 + 31541991-31543139
Length = 382
Score = 29.1 bits (62), Expect = 5.8
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 174 SQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEIV 233
S + + S +R+ +E +V P L + T C +A + S I + E +KEIV
Sbjct: 162 SALRNNSSLLRRNNIES-EVKPNIA-FLEQCGLTTCDIAKILMSGSRILIMQPEHVKEIV 219
Query: 234 TSALK-NQKRKSQGKRWTI 251
A K R+S G R+ +
Sbjct: 220 ACADKFGMPRESAGFRYAL 238
>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 249 WTIKNKISALAIFKRSPKAYRYLRYLAPFPSIKTMQKLMTKI-PVEPDLNTAVLDYLKKL 307
W + +I A+ + SPK L F + + +MT+ V+ D+++A L +K
Sbjct: 1619 WPHERRIQAVGKYLLSPKIISLFNALCKFGELGESRSVMTECSSVDSDISSAFLQSPRKR 1678
Query: 308 APIKKIRAKLCSVVFNEIALKERL 331
K+ + C+V N++ + L
Sbjct: 1679 ---KQRSLQACAVPTNKLLFSDSL 1699
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,470,481
Number of Sequences: 37544
Number of extensions: 364811
Number of successful extensions: 1167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 22
length of query: 363
length of database: 14,793,348
effective HSP length: 83
effective length of query: 280
effective length of database: 11,677,196
effective search space: 3269614880
effective search space used: 3269614880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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