GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002210-TA|BGIBMGA002210-PA|IPR006612|Zinc finger,
C2CH-type
         (363 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    27   0.61 
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    27   0.61 
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    26   1.9  
AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    26   1.9  
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    25   2.5  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    25   4.3  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   7.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   10.0 

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 0.61
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 168 KNVTTRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSE 227
           KN   R +QK SES   + +   V V   +RK  +     + T A  KK A+  +  SS 
Sbjct: 10  KNKGARKRQKSSESDEAEEESSSVVVVQDRRKKANP--NVQSTSALRKKQARSSNADSSH 67

Query: 228 FLKEIVTSALKNQKRKS 244
             +E  ++ L  + ++S
Sbjct: 68  SSEEEESAGLSYKSKRS 84


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 0.61
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 168 KNVTTRSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSE 227
           KN   R +QK SES   + +   V V   +RK  +     + T A  KK A+  +  SS 
Sbjct: 10  KNKGARKRQKSSESDEAEEESSSVVVVQDRRKKANP--NVQSTSALRKKQARSSNADSSH 67

Query: 228 FLKEIVTSALKNQKRKS 244
             +E  ++ L  + ++S
Sbjct: 68  SSEEEESAGLSYKSKRS 84


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 99  QFLQLNSQADVTPQGQFEVQAVPSDSMPASSSQHSSL-EKMDVTPQGQFEVQAVP 152
           Q + + S A + P+G    + VPS + P   S  SSL  K    P G    + +P
Sbjct: 72  QAVTVRSSAPMLPKGGLPPKGVPSSASPVYMSPASSLMTKATSLPLGVPPFRPIP 126


>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal
          protein rpL7a protein.
          Length = 271

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 73 SKKRLKKRAVPKLNLTPPPL 92
          +KK +KK+ VPK  + P PL
Sbjct: 3  TKKPVKKKVVPKQKVAPAPL 22


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 91  PLRDEILFQFL-QLNSQADVTPQGQFEVQAVPSDSMPASSSQHSSLEKMDVT 141
           P RD I+ Q   Q+    +  P        V SDS       + +L++MDVT
Sbjct: 277 PGRDTIIRQLKRQIKLHREAAPDNPIRAVFVASDSNHMLGELNDALKRMDVT 328


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 111 PQGQFEVQAVPSDSMPASSSQHSSL-EKMDVTPQGQFEVQAVP 152
           PQG+   + VPS + P   S  SSL  K    P G    + +P
Sbjct: 89  PQGRSAAEGVPSSASPVYMSPASSLMTKATSLPLGVPPFRPIP 131


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 63   VHFSRRDFTKSKKRLKKRAVPKLNLTPPPLRDEILFQFLQLNSQADVTPQGQFEVQAVPS 122
            V FS   F+    +   +A PKL L  PP     L + L+   ++D    G  E   VP+
Sbjct: 3031 VLFSTEQFSDFIVKPLSKASPKLRLPKPP----NLARMLRFRIRSDAIRIGSNESIVVPN 3086

Query: 123  DSMPASSS 130
                +S+S
Sbjct: 3087 HMERSSAS 3094


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 10.0
 Identities = 12/57 (21%), Positives = 30/57 (52%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFL 229
           R+Q+ + E+ I++ +    ++  +KR L  +L K + T   +K+  +    L++  +
Sbjct: 632 RNQRGQIENSIKELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTARLV 688


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,278
Number of Sequences: 2123
Number of extensions: 12705
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 363
length of database: 516,269
effective HSP length: 65
effective length of query: 298
effective length of database: 378,274
effective search space: 112725652
effective search space used: 112725652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)