GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002210-TA|BGIBMGA002210-PA|IPR006612|Zinc finger,
C2CH-type
         (363 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    24   1.8  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    24   1.8  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    24   1.8  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    24   1.8  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    24   1.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    24   1.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    24   1.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    24   1.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    24   1.8  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 2   RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 60

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 61  ETSKERSRNRTEREK 75


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 2   RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 60

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 61  ETSKERSRNRTEREK 75


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 2   RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 60

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 61  ETSKERSRNRTEREK 75


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 2   RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 60

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 61  ETSKERSRNRTEREK 75


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 235 RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 293

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 294 ETSKERSRNRTEREK 308


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 235 RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 293

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 294 ETSKERSRNRTEREK 308


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 235 RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 293

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 294 ETSKERSRNRTEREK 308


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 235 RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 293

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 294 ETSKERSRNRTEREK 308


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 235 RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 293

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 294 ETSKERSRNRTEREK 308


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 173 RSQQKESESQIRKRKLEDVDVTPRKRKLLSELRKTKCTLASLKKSAKLIDNLSSEFLKEI 232
           RS  ++   + RK+      +   K KLL E    K    S ++  KL  N   E+ K  
Sbjct: 224 RSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKN-EREYRKYG 282

Query: 233 VTSALKNQKRKSQGK 247
            TS  +++ R  + K
Sbjct: 283 ETSKERSRNRTEREK 297


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,276
Number of Sequences: 429
Number of extensions: 3960
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 10
length of query: 363
length of database: 140,377
effective HSP length: 59
effective length of query: 304
effective length of database: 115,066
effective search space: 34980064
effective search space used: 34980064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)