Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002209-TA|BGIBMGA002209-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003579|Ras
small GTPase, Rab type, IPR002078|Sigma-54 factor, interaction region
(213 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 297 6e-82
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 184 7e-48
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 181 6e-47
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 157 9e-40
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 142 3e-35
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 138 7e-34
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 130 1e-31
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 116 2e-27
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 96 3e-21
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 94 2e-20
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 92 6e-20
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 88 8e-19
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 81 1e-16
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 76 5e-15
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 72 6e-14
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 70 2e-13
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 68 9e-13
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 63 3e-11
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 52 5e-08
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 49 6e-07
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 47 2e-06
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 45 1e-05
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 31 0.17
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 30 0.22
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 29 0.68
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 26 3.6
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 3.6
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 26 4.8
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 26 4.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 6.3
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 6.3
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 6.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.4
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 297 bits (730), Expect = 6e-82
Identities = 146/214 (68%), Positives = 175/214 (81%), Gaps = 7/214 (3%)
Query: 4 REDEYDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQ 63
+EDEYDYLFK VLIGDSGVGKS+LL RFTRNEFN+ESKSTIGVEFATR+I +D K IKAQ
Sbjct: 3 QEDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQ 62
Query: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVG 123
IWDTAGQERYRAITSAYYRGAVGAL+VYDI K S++NV RWL+ELR+HAD NI+IMLVG
Sbjct: 63 IWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVG 122
Query: 124 NKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRD 183
NK+DL HLR++ TEEA+AFA N LSFIETSA+D++NVE AFQ +LTEI+RIVS R +
Sbjct: 123 NKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEA 182
Query: 184 PPEGDVIRPDA-EPADVRPSQADSVRR----QCC 212
+G + P A + ++ P+ D ++ QCC
Sbjct: 183 GDDG--VHPTAGQTLNIAPTMNDLNKKKSSSQCC 214
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 184 bits (449), Expect = 7e-48
Identities = 88/166 (53%), Positives = 120/166 (72%)
Query: 7 EYDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+ E++GKT+K QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKS 126
TAGQER+R ITS+YYRGA G ++VYD+ S+ NV++WL+E+ +A + + +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKS 123
Query: 127 DLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEI 172
D+ + + AK FA++ + F+ETSA DSTNVE AF + +I
Sbjct: 124 DMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQI 169
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 181 bits (441), Expect = 6e-47
Identities = 83/165 (50%), Positives = 113/165 (68%)
Query: 8 YDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDT 67
YDYL K++LIGDSGVGKS LL RF+ + F +TIG++F R+IE+DGK IK QIWDT
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSD 127
AGQER+R IT+AYYRGA+G LL+YD+ S++NV W + HA +N+ +L+GNK D
Sbjct: 66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125
Query: 128 LRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEI 172
R + E+ +A A+ G+ F+E SA + NV+ AF + EI
Sbjct: 126 CEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 157 bits (382), Expect = 9e-40
Identities = 77/173 (44%), Positives = 112/173 (64%), Gaps = 5/173 (2%)
Query: 5 EDEYDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEV----DGKTI 60
++ YDYL K+VL G SG GKS LL RF +N+++ + T+G++FA+R I V K I
Sbjct: 3 KESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRI 62
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIM 120
K QIWDTAGQE++R++ YYRGA GA+LVYD+ S+E + WL ++R A I ++
Sbjct: 63 KLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVV 122
Query: 121 LVGNKSDLRHLRSIPTEEAKAFAEANGLSFI-ETSALDSTNVEPAFQNILTEI 172
L G+KSDL++ R + TEEA F +S ETS+ +NVE F ++++ I
Sbjct: 123 LAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTI 175
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 142 bits (345), Expect = 3e-35
Identities = 79/192 (41%), Positives = 116/192 (60%), Gaps = 3/192 (1%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKT-IKAQIWDTAGQE 71
K+VL+GDS VGKSSL+ RF +++F+ +STIG F T+++ +D T +K +IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDL-RH 130
RY+++ YYR A A++VYDI + S E + W++EL+ A + I+I L GNK DL +
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 131 LRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRDPPEGDVI 190
R++ +A+A+A L F ETSA + NV F I ++ Q R V
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQARGAVNRGVN 195
Query: 191 RPDAEPADVRPS 202
+A PA +PS
Sbjct: 196 LSEARPA-AQPS 206
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 138 bits (333), Expect = 7e-34
Identities = 60/157 (38%), Positives = 107/157 (68%)
Query: 12 FKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 71
FK+V +G+ VGK+SL++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHL 131
R+R++ +Y R + A++VYDI H S+ N E+W+ ++R +++I+LVGNK+DL
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131
Query: 132 RSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNI 168
R + EE + A+ + +ETSA NV+ F+ I
Sbjct: 132 RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKI 168
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 130 bits (314), Expect = 1e-31
Identities = 62/165 (37%), Positives = 106/165 (64%), Gaps = 6/165 (3%)
Query: 10 YLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAG 69
+L KV+++G+SGVGK+S+++++ +F+ + K+TIG +F T+ + VD K + Q+WDTAG
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAG 66
Query: 70 QERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHAD----QNILIMLVGNK 125
QER++++ A+YRGA +LVYD+ S+E ++ W E A + +L+GNK
Sbjct: 67 QERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNK 126
Query: 126 SDL-RHLRSIPTEEAKAFAEANG-LSFIETSALDSTNVEPAFQNI 168
D+ R + +A AF +A G + + ETSA ++ NV+ AF+ +
Sbjct: 127 VDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETV 171
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 116 bits (280), Expect = 2e-27
Identities = 60/163 (36%), Positives = 102/163 (62%), Gaps = 7/163 (4%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
KVV++GDSGVGK+ L+++F +F+ E K+TIG +F T+ + VD K + Q+WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQN---ILIMLVGNKSDL- 128
++++ A+YRGA ++VY++ S+++VE W +E Q+ ++VGN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 129 RHLRSIPTEEAKAFAEA-NGLSFI--ETSALDSTNVEPAFQNI 168
R++ A + ++ +G + I E SA ++TNV F+ +
Sbjct: 130 ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETV 172
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 96.3 bits (229), Expect = 3e-21
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 12 FKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 71
+K+V++GD GVGKS+L + ++ F E TI + + E+DG+ + DTAGQE
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLDVLDTAGQE 67
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNIL-IMLVGNKSDLRH 130
Y A+ Y R G LLVY+I S++ + + +++ D++ ++LV NK DL
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEA 127
Query: 131 LRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYR 174
R + E + A++ ++ETSA NVE AF +++ I R
Sbjct: 128 ERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRR 171
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 93.9 bits (223), Expect = 2e-20
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (3%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
++ ++G VGKSSL ++ N F TI F+ ++I+ G+ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQN-ILIMLVGNKSDLRHL 131
Y + S + G G +LVY I S+E V+ ++ +H + I++VGNKSDL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 132 RSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRDPPEGD 188
R++ EE KA A ++ E SA + NV AF+ I++EI ++Q P GD
Sbjct: 127 RAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEI-----EKQANPSPPGD 178
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 91.9 bits (218), Expect = 6e-20
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 12 FKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 71
FK+VL+GD G GK++ + R EF + +T+GVE + I +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHL 131
+ + YY ++++D+ ++Y+NV W R+L +NI I+L GNK D++
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNKVDVKE- 127
Query: 132 RSIPTEEAKAFAEANGLSFIETSALDSTNVEPAF 165
R + +A F L + + SA + N E F
Sbjct: 128 RKVKA-KAITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 88.2 bits (209), Expect = 8e-19
Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
KV +IGDS +GK+SL+ + + F+ ES T+GV F ++I + I IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHLR 132
+ + AV L ++D+++ + +++ W R+ R ++ + +L+G K D H
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGF-NKTAVPILIGTKYD--HFM 128
Query: 133 SIP-------TEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIY 173
+ P T++A+ +A+A S + S S NV+ F+ +L +++
Sbjct: 129 TFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVF 176
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 81.0 bits (191), Expect = 1e-16
Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
K+V++GD GK+SLL+ FT+ F + TI E I VDG +I+ +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTI-FENYIHDIFVDGNSIELSLWDTAGQEE 73
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGNKSDLR-- 129
Y + S Y ++ + + S ENV +WL E+ + + ++LV K DLR
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDLRGA 132
Query: 130 ------HLRSIPTEEAKAFA-EANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMR 182
H + I EE A A + N + ++E SA + V AF TE R+ Q R
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF----TEAARVALAAQPR 188
Query: 183 DPPEG 187
+G
Sbjct: 189 GTKDG 193
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 75.8 bits (178), Expect = 5e-15
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
K+V++GD GK+SLLS FT F E T+ + + VDGK+++ +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEE 68
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENVE-RWLRELRDHADQNILIMLVGNKSDLR 129
Y + Y A L+ + I S ENV +W+ E+ N+ +LVG K+DLR
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLC-PNVPFILVGMKADLR 125
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 72.1 bits (169), Expect = 6e-14
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++ F T+ + +EVDG+ I+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTAGQED 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGNKSDLRH 130
Y + Y + L+ + + S +NV E+W+ E+ H N+ I+LVG K DLR+
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVL-HFCSNLPILLVGCKVDLRN 124
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 70.1 bits (164), Expect = 2e-13
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
K+V++GD GK+ LL F++ F T+ + +EVDG+ ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTAGQED 66
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGNKSDLR-- 129
Y + Y + L+ + + S +NV E+W+ E+ H ++ I+LV K+DLR
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVL-HFCSSLPILLVACKADLRND 125
Query: 130 ----------HLRSIPTEEAKAFAEANG-LSFIETSALDSTNVEPAFQN 167
+ + TEE +A A+ G ++E SA + V F++
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFES 174
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 68.1 bits (159), Expect = 9e-13
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATR-SIEVDGKTIKAQIWDTAGQE 71
K+V++GD G GK+ LL F+ F T+ + T + + K I+ +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGNKSDLRH 130
Y + Y + LL + I S NV E+W E++ H I+LVG K+DLR
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ-HFCPRTPIVLVGLKADLRK 134
Query: 131 ------------LRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQ 166
L + ++A++ A + ++E SA ++T V FQ
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQ 182
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 62.9 bits (146), Expect = 3e-11
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
K V++GD VGK+ LL +T N+F + T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGNKSDLR-- 129
Y + Y L+ + + S+ENV E+W E+ H + ++VG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDLRDD 122
Query: 130 ----------HLRSIPTEEAKAFA-EANGLSFIETSALDSTNVEPAFQNIL 169
H + E+ + A E + ++E SAL ++ F +
Sbjct: 123 PSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAI 173
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 52.4 bits (120), Expect = 5e-08
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
+++++G GK+++L + N+ ++ + T+G T V K IK +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVGFNVET----VTYKNIKFNVWDVGGQDK 77
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENVERWL-RELRDHADQNILIMLVGNKSDL 128
R + Y+ G G + V D A + L R + D ++ L++++ NK DL
Sbjct: 78 IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDL 134
Score = 29.9 bits (64), Expect = 0.29
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 142 FAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRD 183
F GL F+ SA DS + A Q E++RI+S R+MRD
Sbjct: 86 FTGTKGLIFVVDSA-DSNRISEARQ----ELHRIISDREMRD 122
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 48.8 bits (111), Expect = 6e-07
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
+V+L+G GK+++L + N E T G F R++EV+G ++ IWD GQ+
Sbjct: 18 RVLLLGLDNAGKTTILKCLLNEDVN-EVSPTFG--FQIRTLEVEG--LRFTIWDIGGQKT 72
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNIL---IMLVGNKSDL 128
R Y+ + V D L E L+EL ++ +L I+++ NKSD+
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELL--VEEKLLFTSILVLANKSDV 129
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 46.8 bits (106), Expect = 2e-06
Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
+VV+ GD GVGKSSL+S + E N+ S + + S + + DT
Sbjct: 5 RVVICGDQGVGKSSLISALIQ-EDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQSDSN 63
Query: 73 YRAITSAYYRGAVGALLVYDIAKHLSYENVE-RWLRELRDHADQNILIMLVGNKS-DLRH 130
R +A + A LVY + + SYE V WL R N+ I+L NKS DL +
Sbjct: 64 EREYLAAEIKKANVICLVY--SDNYSYERVSIFWLPYFRS-LGVNVPIVLCENKSEDLDN 120
Query: 131 LRSIPTEEAKAFAEANGLSFIET----SALDSTNVEPAF 165
+ + T E + N IE SAL+ NV F
Sbjct: 121 YQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELF 159
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 7 EYDY-LFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTI--GVEF 48
+YD +F ++G GK++LLS F N N + +T+ VEF
Sbjct: 416 KYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTVVNSVEF 460
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 44.8 bits (101), Expect = 1e-05
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
+++++G GK+++L + E + + TIG T V+ + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYRNISFTVWDVGGQDK 73
Query: 73 YRAITSAYYRGAVGALLVYDI-AKHLSYENVERWLRELRDHADQNILIMLVGNKSDL 128
R + Y++ G + V D + E E R L + ++ L+++ NK DL
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 30.7 bits (66), Expect = 0.17
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 7 EYDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWD 66
+YDYL ++ GD G G + + T+ VE I +D I + +
Sbjct: 158 KYDYLLPIIADGDMGFGSVTSTMKMTKR----------FVESGVAMIHLDDLAIGLKRF- 206
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAK 95
T GQ R TS Y R L +DI K
Sbjct: 207 TVGQGRTVVPTSEYLRRLTAVRLQFDIMK 235
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 30.3 bits (65), Expect = 0.22
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESK---STIGVEFATRSIEVDGKTIKAQIWDTAG 69
KV+L+G SG GKSS+ S N +++ +TI +E + + G + +WD G
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHS--HVRFLGNLV-LNLWDCGG 60
Query: 70 QERY 73
QE +
Sbjct: 61 QEAF 64
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 28.7 bits (61), Expect = 0.68
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 14 VVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDG 57
VV+ G SGVGKS+LL R ++ + S R+ E DG
Sbjct: 21 VVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDG 64
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 13 KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIK 61
+V IG VGKS+LLS T+ + S + +E DG I+
Sbjct: 64 RVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQ 112
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 126 SDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTN 160
SD+R + + P E A FA N S ++ +A +S+N
Sbjct: 512 SDIRSMPATPLELATPFANLNVSSPLDRNATNSSN 546
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 17 IGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKT 59
IG + SL+ + +++ NL+ S + V+F +++++ + T
Sbjct: 164 IGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLT 206
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 12 FKVVLIGDSGVGKSSLLSR-FTRNEFNLESKSTIG 45
F V+++G+SG GKS+L++ R+ + KS G
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTG 130
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 14 VVLIGDSGVGKSSLLSRFTR-NEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAG 69
++++G+S +GK++ ++ F + N+ N K T+ ++ + I DT G
Sbjct: 121 LIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMDFVEHKATLSDGDQKFNLTIVDTPG 177
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 19 DSGVGKSSLLSRFTRNEFNLES-KSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 71
+S V +S TR ++ S + + ++ + S VD ++ W+ AG+E
Sbjct: 19 NSYVSDDDTMSSLTRMIYDKNSSRDALHSDYDSSSFNVDSSSVAYPAWNQAGEE 72
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 56 DGKTIKAQIWDTAGQERYRAITSA 79
D K A +WD AG + R+I A
Sbjct: 166 DAKFCSASVWDLAGSDLLRSIEEA 189
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 14 VVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAG 69
V ++G S GKSSL++ ++ S + G + VD + DTAG
Sbjct: 242 VAILGPSNAGKSSLINLLANRRISIVSPQS-GTTRDAIEVLVDINGFPVLLSDTAG 296
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 76 ITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHLRSIP 135
I+ +YR +LV I H + N ER L++ N+L+ N+S +R R I
Sbjct: 595 ISVLFYRHKCFPVLV--IVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLIN 652
Query: 136 TEEAK 140
++ K
Sbjct: 653 QKDPK 657
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 106 LRELRDHADQN---ILIMLVGNKSDLRHLRSIPTEEAKAFAEA 145
+RE+RDHA N +L++L L++ + P E +EA
Sbjct: 52 IREMRDHAFVNLEKLLLVLTSRLFALKNDKKFPNPETAPASEA 94
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,429
Number of Sequences: 5004
Number of extensions: 35176
Number of successful extensions: 180
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 38
length of query: 213
length of database: 2,362,478
effective HSP length: 70
effective length of query: 143
effective length of database: 2,012,198
effective search space: 287744314
effective search space used: 287744314
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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