GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002209-TA|BGIBMGA002209-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003579|Ras
small GTPase, Rab type, IPR002078|Sigma-54 factor, interaction region
         (213 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           157   2e-40
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    70   5e-14
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    38   2e-04
AF004915-1|AAB94671.1|  688|Anopheles gambiae pro-phenol oxidase...    24   3.9  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  157 bits (381), Expect = 2e-40
 Identities = 75/161 (46%), Positives = 108/161 (67%)

Query: 12  FKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKSSL+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHL 131
           RY ++   YYRGA  A++VYDI    S+   + W++EL+  A  NI+I L GNK+DL + 
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANS 144

Query: 132 RSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEI 172
           R +  EEAK +A+ N L F+ETSA  + NV   F  I  ++
Sbjct: 145 RVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL 185


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 70.1 bits (164), Expect = 5e-14
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 13  KVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 72
           K V++GD  VGK+ +L  +T + F  E   T    ++   + VDG  +   +WDTAGQE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGNKSDLRHL 131
           Y  +    Y      L+ Y +A   S+ENV  +W  E++ H   +  I+LVG K DLR  
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPIILVGTKIDLRED 125

Query: 132 R 132
           R
Sbjct: 126 R 126


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 37.9 bits (84), Expect = 2e-04
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGNK 125
           +AGQE Y  +    Y      L+ + +    S+ENV E+W+ E+  H  Q    +LVG +
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQ 59

Query: 126 SDLRHLRSIPTEEAK 140
            DLR   S   + AK
Sbjct: 60  IDLRDENSTLEKLAK 74


>AF004915-1|AAB94671.1|  688|Anopheles gambiae pro-phenol oxidase
           subunit 1 protein.
          Length = 688

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 97  LSYENVERWLRELRDHADQNILIMLVGNKSDLRHLRSI 134
           +S  ++ERW   + +  DQ  ++   GN+  L   R I
Sbjct: 304 VSVNDLERWRDRIHEAIDQGFVLDKSGNRIMLDEQRGI 341


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,804
Number of Sequences: 2123
Number of extensions: 7680
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 213
length of database: 516,269
effective HSP length: 61
effective length of query: 152
effective length of database: 386,766
effective search space: 58788432
effective search space used: 58788432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)