GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002209-TA|BGIBMGA002209-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003579|Ras
small GTPase, Rab type, IPR002078|Sigma-54 factor, interaction region
         (213 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    24   0.94 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.94 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.2  

>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 185 PEGDVIRPDAEPADVRPSQADSV 207
           P GD++ P +EP D    Q+  V
Sbjct: 18  PSGDILSPSSEPLDNDKEQSAQV 40


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 185 PEGDVIRPDAEPADVRPSQADSV 207
           P GD++ P +EP D    Q+  V
Sbjct: 18  PSGDILSPSSEPLDNDKEQSAQV 40


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 8   YDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVE 47
           ++Y+ KV+ I  S     +LL RF     NLE    I V+
Sbjct: 165 FNYM-KVIFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQ 203


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,368
Number of Sequences: 429
Number of extensions: 2378
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 213
length of database: 140,377
effective HSP length: 55
effective length of query: 158
effective length of database: 116,782
effective search space: 18451556
effective search space used: 18451556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)