Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002208-TA|BGIBMGA002208-PA|IPR002143|Ribosomal protein
L1
(364 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VHT5 Cluster: CG7494-PA; n=4; Diptera|Rep: CG7494-PA ... 303 4e-81
UniRef50_UPI0000D572AB Cluster: PREDICTED: similar to CG7494-PA;... 245 2e-63
UniRef50_UPI00015B54F5 Cluster: PREDICTED: similar to GA20391-PA... 227 3e-58
UniRef50_UPI0000DB7CB5 Cluster: PREDICTED: similar to mitochondr... 219 7e-56
UniRef50_Q7KPW7 Cluster: Putative uncharacterized protein; n=2; ... 149 8e-35
UniRef50_UPI0000E8038B Cluster: PREDICTED: similar to Mrpl1-prov... 102 2e-20
UniRef50_Q5PR27 Cluster: LOC553284 protein; n=7; Euteleostomi|Re... 99 2e-19
UniRef50_Q9BYD6 Cluster: 39S ribosomal protein L1, mitochondrial... 90 7e-17
UniRef50_UPI000065CF7F Cluster: 39S ribosomal protein L1, mitoch... 90 1e-16
UniRef50_UPI0000D9B0B8 Cluster: PREDICTED: similar to mitochondr... 68 3e-10
UniRef50_UPI0000E460B6 Cluster: PREDICTED: similar to Mrpl1-prov... 64 4e-09
UniRef50_Q9P6M9 Cluster: Mitochondrial ribosomal protein subunit... 61 5e-08
UniRef50_Q00XM9 Cluster: LSU ribosomal protein L1P; n=1; Ostreoc... 60 7e-08
UniRef50_Q81VU2 Cluster: 50S ribosomal protein L1; n=80; Bacteri... 56 2e-06
UniRef50_Q8ETZ2 Cluster: 50S ribosomal protein L1; n=39; Bacteri... 54 8e-06
UniRef50_Q8EX24 Cluster: 50S ribosomal protein L1; n=2; Mycoplas... 53 1e-05
UniRef50_O67759 Cluster: 50S ribosomal protein L1; n=40; Bacteri... 51 5e-05
UniRef50_Q7UI03 Cluster: 50S ribosomal protein L1; n=2; Planctom... 49 2e-04
UniRef50_A6CA57 Cluster: 50S ribosomal protein L1; n=1; Planctom... 48 3e-04
UniRef50_Q4FQH0 Cluster: 50S ribosomal protein L1; n=91; Bacteri... 48 3e-04
UniRef50_Q9LY66 Cluster: 50S ribosomal protein L1, chloroplast p... 47 7e-04
UniRef50_O51353 Cluster: 50S ribosomal protein L1; n=5; Spirocha... 46 0.002
UniRef50_Q7VRP4 Cluster: 50S ribosomal protein L1; n=31; Gammapr... 46 0.002
UniRef50_A0T0Q6 Cluster: Chloroplast 50S ribosomal protein L1; n... 45 0.004
UniRef50_A7SVN9 Cluster: Predicted protein; n=1; Nematostella ve... 43 0.011
UniRef50_Q82DQ8 Cluster: 50S ribosomal protein L1; n=52; Bacteri... 41 0.058
UniRef50_Q8D236 Cluster: 50S ribosomal protein L1; n=1; Wigglesw... 40 0.077
UniRef50_P96932 Cluster: 50S ribosomal protein L1; n=24; Bacteri... 39 0.18
UniRef50_A2QUK8 Cluster: Similarity to ribosomal protein of the ... 39 0.23
UniRef50_Q8RWT4 Cluster: Putative uncharacterized protein At2g42... 38 0.31
UniRef50_A7T2A8 Cluster: Predicted protein; n=1; Nematostella ve... 38 0.31
UniRef50_Q5LMQ0 Cluster: 50S ribosomal protein L1; n=101; Bacter... 38 0.31
UniRef50_Q7V478 Cluster: 50S ribosomal protein L1; n=7; cellular... 38 0.31
UniRef50_Q38WC5 Cluster: Hypothetical membrane protein; n=1; Lac... 37 0.95
UniRef50_Q6KIF1 Cluster: 50S ribosomal protein L1; n=7; Mycoplas... 37 0.95
UniRef50_A6PR74 Cluster: Ribosomal protein L1; n=1; Victivallis ... 36 1.7
UniRef50_Q5YPC5 Cluster: 50S ribosomal protein L1; n=125; Bacter... 36 2.2
UniRef50_Q6A6K3 Cluster: 50S ribosomal protein L1; n=20; Bacteri... 35 3.8
UniRef50_Q92XZ1 Cluster: Putative uncharacterized protein; n=3; ... 34 5.0
UniRef50_A5FC37 Cluster: Putative uncharacterized protein precur... 34 5.0
UniRef50_Q870V5 Cluster: Related to ribosomal protein L1; n=3; S... 34 5.0
UniRef50_Q6N4R5 Cluster: 50S ribosomal protein L1; n=28; Bacteri... 34 6.7
UniRef50_P90493 Cluster: RS1 protein; n=1; Human herpesvirus 2|R... 33 8.8
UniRef50_A1A3N2 Cluster: Glycosyl hydrolase; n=2; Bifidobacteriu... 33 8.8
>UniRef50_Q9VHT5 Cluster: CG7494-PA; n=4; Diptera|Rep: CG7494-PA -
Drosophila melanogaster (Fruit fly)
Length = 354
Score = 303 bits (744), Expect = 4e-81
Identities = 140/299 (46%), Positives = 200/299 (66%), Gaps = 4/299 (1%)
Query: 65 IQVEVTKVGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
++VEV KVGFIPHNQR +K+ +KH D K +P DD Y +YY+W VY+ ++A++
Sbjct: 46 VKVEVKKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQEAIQC 105
Query: 125 HQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPFPREEERTILAFCK 184
H+ETHHP+M+N P+A + IE NM K TRF+D+F R++++PH F EER I+ F K
Sbjct: 106 HRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPHKFDHGEERKIIVFTK 165
Query: 185 GAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRFP 244
G + E ++AGA++ GG L +Y YV+AHPNIL +LV +RGLMK++FP
Sbjct: 166 GNNEVLEAREAGASLVGGVELIKDITSGELLLSDYQYVIAHPNILAELVALRGLMKRKFP 225
Query: 245 NVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLL 304
N +S TL NL E++ KF+ GI Y KDE Q +FG + VG L+M+ +++ ENI LL
Sbjct: 226 NPKSETLGTNLAEMIVKFSSGISYSAAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLL 285
Query: 305 KDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVFV----DRTLSKEVQDDSDDEDEP 359
+D+ +RPKR+G F+TR LL SPPS+EQL IDPFV+V D++ +K +D + + EP
Sbjct: 286 QDINTMRPKREGRFITRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEP 344
>UniRef50_UPI0000D572AB Cluster: PREDICTED: similar to CG7494-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG7494-PA - Tribolium castaneum
Length = 340
Score = 245 bits (599), Expect = 2e-63
Identities = 123/291 (42%), Positives = 179/291 (61%), Gaps = 3/291 (1%)
Query: 74 FIPHNQRGRKVVKTVVNK-HFSDEHKAIP-IDDVYPMKYYKWVVYTAEDAVKAHQETHHP 131
FIPHN+R ++ + K + D K P DDVY ++YY+ + +A+K H+ETHHP
Sbjct: 49 FIPHNERNKEKFLALRPKLKYDDSWKQPPPSDDVYHVRYYQRPAMSLVEAIKNHRETHHP 108
Query: 132 TMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPFPREEERTILAFCKGAELIKE 191
M+N P A + +IE NM G K TRF+D FTR+ +P F EER I+AF K KE
Sbjct: 109 DMYNEPGASLLVRIELNMQGEKATRFVDDFTRIVPIPFKFEHGEERPIIAFAKTGSAQKE 168
Query: 192 LQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRFPNVRSGTL 251
+AGA +AGG L + +V+AHP+IL +LV +RGLMK+RFPN + GTL
Sbjct: 169 ALNAGAQLAGGVDLIKQVQNGAVSLQNFKFVIAHPDILPELVALRGLMKRRFPNPKMGTL 228
Query: 252 DPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVR 311
D +L + ++F GI Y KDE + FG +E +G L+M+ + + N G L+KDV ++R
Sbjct: 229 DVDLGAVAERFVNGISYTAKKDEYEKDFGLIETVIGSLDMDVEHLEGNFGALVKDVYSMR 288
Query: 312 PKRDGLFVTRCLLVSPPSTEQLMIDPFVFVDRTLSKEV-QDDSDDEDEPVA 361
PKR G F++RCLLVSPPS+E+ ++ +V+ K V Q++ +++ E VA
Sbjct: 289 PKRQGDFISRCLLVSPPSSEKFKVEYRGYVEEAPRKVVDQEEEEEKGERVA 339
>UniRef50_UPI00015B54F5 Cluster: PREDICTED: similar to GA20391-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
GA20391-PA - Nasonia vitripennis
Length = 356
Score = 227 bits (555), Expect = 3e-58
Identities = 108/307 (35%), Positives = 186/307 (60%), Gaps = 9/307 (2%)
Query: 65 IQVEVTKVGFIPHNQRGRKVVKTVVNKHFSDEH-KAIPIDDVYPMKYYKWVVYTAEDAVK 123
++VEV K+ F +R +K+ + ++EH K + +DDV+ M+Y++W VY+ +A++
Sbjct: 50 VKVEVKKLTFEEKVRRSKKINIIKPDAMITNEHTKPVAVDDVFYMRYFRWKVYSFAEAIQ 109
Query: 124 AHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPFPREEERTILAFC 183
H+E HPTM++APD+ + E N+TG+K+T+ + +F ++ + H F EER +LAFC
Sbjct: 110 NHREYFHPTMYDAPDSIVCVNAELNLTGVKKTKPVGTFNKIVPVKHHFDHGEERRLLAFC 169
Query: 184 KGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRF 243
K E + DAGA +AGG+ + YD VVAHP+++ +++ +RGL+KK++
Sbjct: 170 KAEEDVAAALDAGAVLAGGSDIIKLILSGEISIHNYDTVVAHPSMMPEVLTLRGLLKKKY 229
Query: 244 PNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKL 303
PN+++ TL ++K +V GI+Y E P +G EVP+G+L+ME + + +N+
Sbjct: 230 PNIKNSTLGMDIKSIVHLHLHGIKYTAKPYEHFPEYGVAEVPIGKLSMETEHLEDNLRSA 289
Query: 304 LKDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVFVD-----RTLSKEVQDDSDDEDE 358
+ + + +PKR G F+TR ++ PPS E+ ID ++++ + K D+ DDE+E
Sbjct: 290 IDSILSAKPKRPGPFITRLRIICPPSLEKFKIDDKLYIEEEPEVKQTEKGEDDEYDDEEE 349
Query: 359 ---PVAA 362
PVAA
Sbjct: 350 VAVPVAA 356
>UniRef50_UPI0000DB7CB5 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein L1 CG7494-PA; n=1; Apis mellifera|Rep:
PREDICTED: similar to mitochondrial ribosomal protein L1
CG7494-PA - Apis mellifera
Length = 351
Score = 219 bits (536), Expect = 7e-56
Identities = 109/292 (37%), Positives = 171/292 (58%), Gaps = 1/292 (0%)
Query: 66 QVEVTKVGFIPHNQRGRKV-VKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
+V V +VGF+P+ Q+ +K V+ + D K +DDV+ +KY++ +Y+ ++A++
Sbjct: 53 KVVVEQVGFVPYKQQKKKTKVEICPLNNIDDSWKWKAVDDVWIVKYHQQPIYSFQEAIEC 112
Query: 125 HQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPFPREEERTILAFCK 184
H+ETHHPTM+N P+A + A I+ NM K+ RF+D FTR+ PH F +RT+LAF +
Sbjct: 113 HRETHHPTMYNKPNAIVNAFIQLNMRREKKNRFVDKFTRIVDTPHIFEYNNKRTVLAFSQ 172
Query: 185 GAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRFP 244
E +E ++AGA +GG EYD+VVAH NIL+DL+ +RGL+KK+FP
Sbjct: 173 NLEEQEEARNAGADYSGGIELIKKIQNGTFQFKEYDFVVAHANILSDLLLVRGLLKKKFP 232
Query: 245 NVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLL 304
N+R G L ++ +LV KF GI Y I + +G + V G L+M K + EN L+
Sbjct: 233 NMRIGNLGTDMNKLVTKFKNGIGYAAIPHKTFKEYGEINVAFGSLDMNMKYLEENFCALI 292
Query: 305 KDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVFVDRTLSKEVQDDSDDE 356
D++ ++P+RD F+ R + S S E I+ ++ KE ++ DE
Sbjct: 293 NDIELMKPQRDASFIVRIQIRSELSDESFTINYQDYIATKTDKETNEEETDE 344
>UniRef50_Q7KPW7 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 377
Score = 149 bits (362), Expect = 8e-35
Identities = 79/250 (31%), Positives = 133/250 (53%)
Query: 101 PIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDS 160
P DV+ ++K YT +A+ H+E P+++N P+A I ++E NMT +QT+ +
Sbjct: 97 PTLDVFIKSHFKTQYYTVSEALDMHRELQSPSIYNNPNAPIRLRLELNMTTERQTKMVTG 156
Query: 161 FTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYD 220
+ +PHPF E+RTILAF +L + ++GA +A G +YD
Sbjct: 157 SDEIVPVPHPFNHNEKRTILAFANDVKLQELAVESGAEMALGQDTIKKIIKGQFRTDDYD 216
Query: 221 YVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFG 280
+ V+H ++ + ++P+RG++K RFP +G L NL EL++KF G++ + D P +G
Sbjct: 217 FCVSHSDMGSSILPLRGILKMRFPTRANGGLGENLPELIEKFKNGVKLNIKGDPVYPIWG 276
Query: 281 SVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVF 340
+ VGRL+M + + NI ++ A R G FV R LL++ P E ID +
Sbjct: 277 LSDCVVGRLSMPNEHIEANIATVIAAACAHRNPALGSFVNRALLMTIPGEENYAIDVKPW 336
Query: 341 VDRTLSKEVQ 350
+ +E++
Sbjct: 337 IPIPTEEEIE 346
>UniRef50_UPI0000E8038B Cluster: PREDICTED: similar to Mrpl1-prov
protein; n=1; Gallus gallus|Rep: PREDICTED: similar to
Mrpl1-prov protein - Gallus gallus
Length = 332
Score = 102 bits (244), Expect = 2e-20
Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 15/263 (5%)
Query: 101 PIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDS 160
P+DDVY YYK Y E+AV ++ F P F++ + +M K+ + +D
Sbjct: 76 PVDDVYLTWYYKRPSYNVEEAVGMLKKFQELD-FTYPKQFVYINVTLDMELPKKKK-VDQ 133
Query: 161 FTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYD 220
F + LLP+ F +E +L F + + + ++ GA V GG + D
Sbjct: 134 FASIVLLPYRFT-DETNKVLVFTENEQEAEIARENGAAVVGGVELIKWILEDE---IQMD 189
Query: 221 YVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFG 280
+ +A P I+ L+P+R +K+++P+ R +L ++ ++++ F G++Y ++DE
Sbjct: 190 FYIAVPAIIPKLIPLRNKLKRKYPSTRRNSLGHDIPKMLQFFREGLEY-TVQDER----- 243
Query: 281 SVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLM-IDPFV 339
++ + RL+M +Q+ N+ +++D+ +P G FV + ++ S S L+ +D +
Sbjct: 244 LIKTRIARLDMPTEQIVANLKTIIEDICKFKPSSAGPFVKKLVIRSSTSEGLLLNLDGLL 303
Query: 340 -FVDRTLSKEVQD-DSDDEDEPV 360
++ KE + + DDE++PV
Sbjct: 304 PEAEKVEEKEEEPAEDDDEEKPV 326
>UniRef50_Q5PR27 Cluster: LOC553284 protein; n=7; Euteleostomi|Rep:
LOC553284 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 320
Score = 98.7 bits (235), Expect = 2e-19
Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 19/232 (8%)
Query: 101 PIDDVYPMKYYKWVVY---TAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRF 157
P+DDVY ++YY +Y A D +K+ Q+ F+A + I+ + NM +++ R
Sbjct: 87 PVDDVYMVRYYPRPLYELTVAIDMLKSFQKLD----FSAENQPIYINLRLNMK-LEKKRK 141
Query: 158 MDSFTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLF 217
+D F R LPHPF + + ++ F + + + + GA VAGG
Sbjct: 142 LDPFVRTIHLPHPF-KSDINKVVVFTEKPDQARIALENGAAVAGGVELFEKILADEITA- 199
Query: 218 EYDYVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQP 277
D+ +A P+IL LVP++ ++K+FP + GT+ N+ +++ F G +Y +++D
Sbjct: 200 --DFYLAEPDILPKLVPLKNKLRKKFPKSKRGTVGINIPRMLELFKTGHEY-IVEDI--- 253
Query: 278 SFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPS 329
V V L+M + + ENI +LKDV + +P G + R ++ S S
Sbjct: 254 ---YVNTEVATLDMPKEHILENIHTILKDVASHKPAEFGPIIDRAIVCSRSS 302
>UniRef50_Q9BYD6 Cluster: 39S ribosomal protein L1, mitochondrial
precursor; n=26; Mammalia|Rep: 39S ribosomal protein L1,
mitochondrial precursor - Homo sapiens (Human)
Length = 303
Score = 90.2 bits (214), Expect = 7e-17
Identities = 67/258 (25%), Positives = 127/258 (49%), Gaps = 15/258 (5%)
Query: 101 PIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDS 160
P DDVY + Y +Y E AV ++ F +P ++ + +M + + + ++
Sbjct: 60 PEDDVYLKRLYPRQIYEVEKAVHLLKK-FQILDFTSPKQSVYLDLTLDMA-LGKKKNVEP 117
Query: 161 FTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYD 220
FT + LP+PF E + + F + A +K ++ GA AGGT D
Sbjct: 118 FTSVLSLPYPFASEINK-VAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVA---D 173
Query: 221 YVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFG 280
+ VA P I+ +L +R + K++P + ++ ++ ++++ F G + KV DE + +F
Sbjct: 174 FYVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKV--DEERENF- 230
Query: 281 SVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVF 340
++ + L+M Q+A N+ ++ +V RP G FV R L S S E L++
Sbjct: 231 -LQTKIATLDMSSDQIAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTS-EGLLLK---- 284
Query: 341 VDRTLSKEVQDDSDDEDE 358
+D L KEV+++ ++++
Sbjct: 285 IDPLLPKEVKNEESEKED 302
>UniRef50_UPI000065CF7F Cluster: 39S ribosomal protein L1,
mitochondrial precursor (L1mt) (MRP-L1).; n=1; Takifugu
rubripes|Rep: 39S ribosomal protein L1, mitochondrial
precursor (L1mt) (MRP-L1). - Takifugu rubripes
Length = 315
Score = 89.8 bits (213), Expect = 1e-16
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 12/229 (5%)
Query: 101 PIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDS 160
P+DDVY ++YY +Y +A+ +T F + ++ ++ NM +++ + +D+
Sbjct: 79 PVDDVYILRYYPRTIYDVSEAIDM-LKTFQRLDFTPQEQPVYIDLQLNMK-LQKKKKVDA 136
Query: 161 FTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYD 220
F LPH F E R +L F + A K + GA +AGG D
Sbjct: 137 FISTVQLPHLFKTEMNR-VLVFTEDANQAKVAMENGAVLAGGVELIQPILDEEISA---D 192
Query: 221 YVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFG 280
+ +A P IL L P+R ++K+FP G++ + ++++ F G +Y V D
Sbjct: 193 FYIAVPEILNKLAPLRNKLRKKFPKNSRGSVGIRIPKMLELFKYGHEYFVESD------C 246
Query: 281 SVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPS 329
+ + L+M + + N+ +L DV + RP G F+ R ++ S S
Sbjct: 247 YIRTQIATLDMPKEHIFANLRTILLDVCSHRPADMGPFIERAIIASHTS 295
>UniRef50_UPI0000D9B0B8 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein L1; n=1; Macaca mulatta|Rep:
PREDICTED: similar to mitochondrial ribosomal protein L1
- Macaca mulatta
Length = 673
Score = 68.1 bits (159), Expect = 3e-10
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 186 AELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRFPN 245
A +K ++ GA AGGT + D+ VA P I+ +L +R + KRFP
Sbjct: 513 ASEVKIAEENGAAFAGGTSLIQKIWDDEIVV---DFYVAVPEIMPELNRLRKKLGKRFPR 569
Query: 246 VRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLK 305
V ++ ++ ++++ F G + KV DE + +F ++ + RL+M Q+A N+ ++
Sbjct: 570 VSRNSIGRDIPKMLEFFKNGHEIKV--DEERENF--LQTKIARLDMSSDQIAANLQAVIN 625
Query: 306 DVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVFVDRTLSKEVQDDSDDED 357
+V RP G FV R L S S E L++ +D L KEV+++ +D
Sbjct: 626 EVCRHRPLNLGPFVIRAFLRSSTS-EGLLLK----IDPLLPKEVKNEESKKD 672
>UniRef50_UPI0000E460B6 Cluster: PREDICTED: similar to Mrpl1-prov
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to Mrpl1-prov protein -
Strongylocentrotus purpuratus
Length = 442
Score = 64.5 bits (150), Expect = 4e-09
Identities = 42/189 (22%), Positives = 88/189 (46%), Gaps = 6/189 (3%)
Query: 99 AIPIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMT---GIKQT 155
A P+DDVY + +Y + T +A+ + P+ + + ++ +++
Sbjct: 102 ARPVDDVYMICHYPPQMVTFHEAMDKLRSQDQWAHIRKPELYKNRTVTISILLDMALEKK 161
Query: 156 RFMDSFTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXX 215
+ + +FT + +LPH F +E+ +L F + ++ L DAGA + G
Sbjct: 162 KKVVAFTNMVILPHQF--KEDNKVLCFAEDSDTQAAL-DAGAFMVGNADTVQDIVDHRIH 218
Query: 216 LFEYDYVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEA 275
+DY V+ P ++ L ++ ++KRFP + G++ N+ ++ ++ G +YK +A
Sbjct: 219 HRAFDYCVSTPEMMPSLTKLKEKLRKRFPASKRGSVSNNITAMLNLYSKGHEYKDTDTQA 278
Query: 276 QPSFGSVEV 284
G+ V
Sbjct: 279 ALDAGAFMV 287
Score = 61.7 bits (143), Expect = 3e-08
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 194 DAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDP 253
DAGA + G +DY V+ P ++ L ++ ++KRFP + G++
Sbjct: 281 DAGAFMVGNADTVQDIVDHKIHHRAFDYCVSTPEMMPSLTKLKEKLRKRFPASKRGSVSN 340
Query: 254 NLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPK 313
N+ ++ + G +YKV Q ++ +G+L++ +Q+ EN+ ++ DV + +P
Sbjct: 341 NIPAMLNLYCKGHEYKV-----QGKHNTINCAIGKLSLTNEQLEENMAAIISDVCSHKPL 395
Query: 314 RDGLFVTRCLLVS 326
G F+ + L +
Sbjct: 396 EFGSFIKKLTLTA 408
>UniRef50_Q9P6M9 Cluster: Mitochondrial ribosomal protein subunit
L1; n=2; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit L1 - Schizosaccharomyces pombe
(Fission yeast)
Length = 253
Score = 60.9 bits (141), Expect = 5e-08
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 152 IKQTRFMDSFTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXX 211
+K R S PHPF +E I F KGA + L+ GAT G
Sbjct: 75 LKSNRRAPSARGQIAFPHPF--QEPPKICVFAKGAAADEALK-LGATYVGAEDLVKKIQT 131
Query: 212 XXXXLFEYDYVVAHPNILTDLVPIRGLM--KKRFPNVRSGTLDPNLKELVKKFAGGIQYK 269
E+ AHPN L + L+ K+ P+++ GT+ LK L++ + Y+
Sbjct: 132 EP---LEFSKCFAHPNSAELLPQVAKLLGSKRLMPSIKRGTISDELKPLIESALTAVDYR 188
Query: 270 VIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDG 316
Q GS+ +PVG+L K++ ENI L+ +V+ K G
Sbjct: 189 ------QNDAGSINLPVGKLGFSDKELQENIEALVSNVRFTLAKLPG 229
>UniRef50_Q00XM9 Cluster: LSU ribosomal protein L1P; n=1;
Ostreococcus tauri|Rep: LSU ribosomal protein L1P -
Ostreococcus tauri
Length = 304
Score = 60.5 bits (140), Expect = 7e-08
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 179 ILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGL 238
+ AF +G E + + AGA+V GG ++D VA P +++ L + +
Sbjct: 134 VAAFAEG-ESAEAARAAGASVVGGAELVDAIKEGGSGAIDFDKAVATPGMMSKLKEVARV 192
Query: 239 MKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSVEVPVGRLNMEPKQ 295
+ R PN + GT+ + E V++ GG ++++ K+ V VG++N E +Q
Sbjct: 193 LGPRGLMPNPKVGTVTTEIAEAVREQLGGRVEFRAEKNAI------VHTMVGKVNFEDEQ 246
Query: 296 VAENIGKLLKDVQAVRPKRDG 316
+ ENI + +++ A+RPK G
Sbjct: 247 LVENISAVYRELWALRPKGKG 267
>UniRef50_Q81VU2 Cluster: 50S ribosomal protein L1; n=80;
Bacteria|Rep: 50S ribosomal protein L1 - Bacillus
anthracis
Length = 230
Score = 55.6 bits (128), Expect = 2e-06
Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 15/150 (10%)
Query: 166 LLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAH 225
+LPH + + +L F KG E KE + AGA G F++D VVA
Sbjct: 64 VLPHGTGKVQR--VLVFAKG-EKAKEAEAAGADFVGDADYIGKIQQGW---FDFDVVVAT 117
Query: 226 PNILTDLVPIRGLM--KKRFPNVRSGTLDPNLKELVKKF-AGGIQYKVIKDEAQPSFGSV 282
P+++ ++ + ++ K PN ++GT+ ++ + V + AG ++Y+V D+A G++
Sbjct: 118 PDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRV--DKA----GNI 171
Query: 283 EVPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
VP+G+++ E ++ EN + +Q V+P
Sbjct: 172 HVPIGKVSFEDAKLVENFRTIADTLQKVKP 201
>UniRef50_Q8ETZ2 Cluster: 50S ribosomal protein L1; n=39;
Bacteria|Rep: 50S ribosomal protein L1 - Oceanobacillus
iheyensis
Length = 230
Score = 53.6 bits (123), Expect = 8e-06
Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 166 LLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAH 225
+LPH + + +L F KG E KE + AGA G FE+D +VA
Sbjct: 64 VLPHGTGKTQR--VLVFAKG-EKAKEAEAAGADYVG---EGDYINKINQGWFEFDVIVAT 117
Query: 226 PNILTDLVPIRGLM--KKRFPNVRSGTLDPNLKELVKKF-AGGIQYKVIKDEAQPSFGSV 282
P+++ ++ + ++ K PN ++GT+ +++ V AG ++Y+V K ++
Sbjct: 118 PDMMAEVGKLGRVLGPKGLMPNPKTGTVTFEVEKAVNDIKAGKVEYRVDKS------ANI 171
Query: 283 EVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRD-GLFVTRCLLVS 326
VP+G+++ + +++ +N L + + V+P+ G+++ + S
Sbjct: 172 HVPIGKISFDDQKLVDNFVALTEQLVKVKPQSSKGIYMKNASITS 216
>UniRef50_Q8EX24 Cluster: 50S ribosomal protein L1; n=2;
Mycoplasma|Rep: 50S ribosomal protein L1 - Mycoplasma
penetrans
Length = 336
Score = 52.8 bits (121), Expect = 1e-05
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 25/244 (10%)
Query: 116 YTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPFPREE 175
YT E+AV ++T + ++ D I ++ + + +Q R S LP+ F +E+
Sbjct: 25 YTIEEAVNLAKQTSNAKFLSSIDIAIKLNLDTSKSD-QQLRGTVS------LPYFFGKEK 77
Query: 176 ERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPI 235
IL KG K+ + G AG + ++D ++ P ++ +L +
Sbjct: 78 R--ILVLDKGLTQ-KDAKSLGVNHAGDSELIAEISKGW---LDFDLIITTPKMMPELSKL 131
Query: 236 RGLMKKR--FPNVRSGTLDPNLKELVKKFAGGI-QYKVIKDEAQPSFGSVEVPVGRLNME 292
++ R PN ++G + +L + + +F GI QY+ S+G++ + VG+ N +
Sbjct: 132 GKILGTRGLMPNPKNGNVTTDLPKTIAEFKKGINQYRT------DSYGNIHMVVGKANAD 185
Query: 293 PKQVAENIGKLLKDVQAVR-PKRDGLFVTRCLLVSP--PSTEQLMIDPFVFVDRTLSKEV 349
++ ENI LL + A R G+F+ + L S P L+ V K +
Sbjct: 186 TAKIVENINFLLSFIAAKRLTSVKGIFIEKVNLSSTMGPGIRVLVNKTAVVKKTAKGKVI 245
Query: 350 QDDS 353
DDS
Sbjct: 246 ADDS 249
>UniRef50_O67759 Cluster: 50S ribosomal protein L1; n=40;
Bacteria|Rep: 50S ribosomal protein L1 - Aquifex
aeolicus
Length = 242
Score = 50.8 bits (116), Expect = 5e-05
Identities = 39/161 (24%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 156 RFMDSFTRLSL-LPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXX 214
R+ D R S+ LPH + + ++ F +G E K+ ++AGA GG
Sbjct: 56 RYADQMVRGSVVLPHGLGKPIK--VVVFAEG-EYAKKAEEAGADYVGGDELINKILKEEW 112
Query: 215 XLFEYDYVVAHPNILTDLVPIRGLMKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVI 271
++D +A P ++ + + ++ R P+ ++GT+ N+++ +K G +++KV
Sbjct: 113 T--DFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKV- 169
Query: 272 KDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
D+A G+V +PVG+++ E +++ +N+ + V +P
Sbjct: 170 -DKA----GNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKP 205
>UniRef50_Q7UI03 Cluster: 50S ribosomal protein L1; n=2;
Planctomycetaceae|Rep: 50S ribosomal protein L1 -
Rhodopirellula baltica
Length = 225
Score = 49.2 bits (112), Expect = 2e-04
Identities = 39/159 (24%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 159 DSFTRLSL-LPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLF 217
D R SL LPH + + ++ F KG + K ++AGA G
Sbjct: 55 DQIIRGSLVLPHGIGKTQR--VIVFAKG-DAAKAAEEAGADEVGQEDLAKKIKDGWT--- 108
Query: 218 EYDYVVAHPNILTDLVPIRGLMKKR--FPNVRSGTLDPNLKELVKKF-AGGIQYKVIKDE 274
++D +A P+++ + P+ ++ R P+ R+GT+ P++ ++V ++ AG ++++ K
Sbjct: 109 DFDVCIAAPDMMGLVGPLGRVLGPRGLMPSPRAGTVTPDVGKVVSEYKAGKVEFRNDKG- 167
Query: 275 AQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPK 313
G+V VG+++ E ++ ENI + + A++P+
Sbjct: 168 -----GNVHAMVGKMSFEANKLEENIASFVDFISAMKPQ 201
>UniRef50_A6CA57 Cluster: 50S ribosomal protein L1; n=1;
Planctomyces maris DSM 8797|Rep: 50S ribosomal protein
L1 - Planctomyces maris DSM 8797
Length = 234
Score = 48.4 bits (110), Expect = 3e-04
Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 16/161 (9%)
Query: 156 RFMDSFTRLSL-LPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXX 214
R D R S+ LPH + + ++ F +GA + AGA GG
Sbjct: 61 RQADQLVRGSINLPHGIGKTQR--VVVFAQGANA-DAAEAAGADAVGGKDLAEKIKGGW- 116
Query: 215 XLFEYDYVVAHPNILTDLVPIRGLMKKR--FPNVRSGTLDPNLKELVKKF-AGGIQYKVI 271
++D +A P+++ + P+ ++ R P+ R+GT+ ++ V+ + AG ++++V
Sbjct: 117 --LDFDVAIATPDMMGVVGPLGRVLGPRGLMPSPRAGTVTQDVGTAVQDYKAGKVEFRV- 173
Query: 272 KDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
+ G+V VG+L+ + Q+ ENI +LK + ++RP
Sbjct: 174 -----DAGGNVHCRVGKLSFDENQLVENIQAMLKFLDSLRP 209
>UniRef50_Q4FQH0 Cluster: 50S ribosomal protein L1; n=91;
Bacteria|Rep: 50S ribosomal protein L1 - Psychrobacter
arcticum
Length = 233
Score = 48.4 bits (110), Expect = 3e-04
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 177 RTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIR 236
+ + F +GA + ++AGA + G ++D V+A P+ + + +
Sbjct: 73 KRVAVFAQGAAA-EAAKEAGADIVGFEDLAESIKAGN---MDFDVVIAAPDAMRVVGQLG 128
Query: 237 GLMKKR--FPNVRSGTLDPNLKELV-KKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEP 293
++ R PN + GT+ PN+ E V AG QY+V D+A G + +G++
Sbjct: 129 TILGPRGLMPNPKVGTVTPNVAEAVLNAKAGQAQYRV--DKA----GIIHTTIGQVGFTA 182
Query: 294 KQVAENIGKLLKDVQAVRPKRD-GLFVTRCLLVSPPSTEQLMIDP 337
+QV +N L+ D++ +P G F+ + + +S L IDP
Sbjct: 183 EQVIQNAEALISDLRRAKPATSKGTFIKK-ITLSSTMGPGLSIDP 226
>UniRef50_Q9LY66 Cluster: 50S ribosomal protein L1, chloroplast
precursor; n=47; cellular organisms|Rep: 50S ribosomal
protein L1, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 346
Score = 47.2 bits (107), Expect = 7e-04
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 176 ERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPI 235
+ I+A E + E + AGA + G E+D ++A P+++ + +
Sbjct: 179 QTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGG---FMEFDKLIASPDMMVKVAGL 235
Query: 236 RGLMKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSVEVPVGRLNME 292
++ R PN ++GT+ N+ + +++F G ++++ K G V +P G++N
Sbjct: 236 GKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKT------GIVHIPFGKVNFT 289
Query: 293 PKQVAENIGKLLKDVQAVRPK 313
+ + N +K V+ +PK
Sbjct: 290 EEDLLINFLAAVKSVETNKPK 310
>UniRef50_O51353 Cluster: 50S ribosomal protein L1; n=5;
Spirochaetaceae|Rep: 50S ribosomal protein L1 - Borrelia
burgdorferi (Lyme disease spirochete)
Length = 226
Score = 46.0 bits (104), Expect = 0.002
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 166 LLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAH 225
+LP+ F + + IL F KG + E + GAT G E+D VVA
Sbjct: 61 VLPNQFMKPKR--ILVFAKG-DRADEARAFGATYVGDDDLINKIKSGWD---EFDVVVAT 114
Query: 226 PNILTDLVPIRGLMKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSV 282
P+++ D+ + ++ KR PN ++ T+ NLK+ + G +++ K+ G +
Sbjct: 115 PDMMKDVGRLGPILGKRGLMPNPKTQTVTNNLKDAINSLKKGRTEFRANKN------GVI 168
Query: 283 EVPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
G+ +M+ +++ EN + +K+V RP
Sbjct: 169 SFSFGKSSMDNEKIKENYEEFVKEVVKKRP 198
>UniRef50_Q7VRP4 Cluster: 50S ribosomal protein L1; n=31;
Gammaproteobacteria|Rep: 50S ribosomal protein L1 -
Blochmannia floridanus
Length = 235
Score = 45.6 bits (103), Expect = 0.002
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 24/230 (10%)
Query: 112 KWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPF 171
K V Y D ++ QET D + N+ GI R + ++PH
Sbjct: 16 KSVQYNIADGLRILQETARVKFVENVDVAV------NL-GINPRRSDQNVRNSVVMPHGL 68
Query: 172 PREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHP---NI 228
++ I F +G + + AGA AG +D +A P NI
Sbjct: 69 GKKIR--IAVFTQGESNVVLARRAGADFAG--LEDLCQLIKTKGCTGFDVFIASPDVMNI 124
Query: 229 LTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFA-GGIQYKVIKDEAQPSFGSVEVPVG 287
++ L PI G K PN + T+ NL + ++ F G ++YK K+ G + +G
Sbjct: 125 VSQLGPILG-PKGLMPNPKMSTVTQNLTDTIRNFKLGQVRYKNDKN------GIIHAVIG 177
Query: 288 RLNMEPKQVAENIGKLLKDVQAVRPKR-DGLFVTRCLLVSPPSTEQLMID 336
++N + EN+ L+ + V+P + G+++ + + +S ++ID
Sbjct: 178 KINFNISCLQENLEALVFSIYQVKPTQFKGIYIKK-IYISTTMGRSILID 226
>UniRef50_A0T0Q6 Cluster: Chloroplast 50S ribosomal protein L1; n=2;
Bacillariophyta|Rep: Chloroplast 50S ribosomal protein
L1 - Thalassiosira pseudonana (Marine diatom)
Length = 230
Score = 44.8 bits (101), Expect = 0.004
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 16/162 (9%)
Query: 155 TRFMDSFTRLSL-LPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXX 213
T++ D R ++ LPH + +L E + GA + G
Sbjct: 52 TKYADQQLRTTVTLPHGIGKSMRIAVLT---NEANFNEANEGGADIVGSQELIDDISQGN 108
Query: 214 XXLFEYDYVVAHPNILTDLVPIRGLM--KKRFPNVRSGTLDPNLKELVKKFAGG-IQYKV 270
+D +VA P+++ L + ++ K P+ +SGT+ NL E + F G +YK
Sbjct: 109 ---LNFDLLVATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTNLTETLSDFKKGKFEYKA 165
Query: 271 IKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
K G V V G+ N Q+ EN+ L + ++ RP
Sbjct: 166 DKT------GVVHVNFGKANFSKDQLMENLTSLYQSIEQNRP 201
>UniRef50_A7SVN9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 299
Score = 43.2 bits (97), Expect = 0.011
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 219 YDYVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPS 278
+D ++ ++L + P++ +++++ P R GT ++ ++ + G YK K
Sbjct: 183 FDQCLSTLDMLDKVKPLQRILRQKMPTTRRGTATDDIVTAIRTYKQGHPYKCDKH----- 237
Query: 279 FGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVS 326
G + +G+L+ ++ N L++ V + R G F+TR +L S
Sbjct: 238 -GYLNAGIGKLSFADDEIKVNAQALIQTVYSHRVSSKGKFITRVMLSS 284
>UniRef50_Q82DQ8 Cluster: 50S ribosomal protein L1; n=52;
Bacteria|Rep: 50S ribosomal protein L1 - Streptomyces
avermitilis
Length = 241
Score = 40.7 bits (91), Expect = 0.058
Identities = 31/137 (22%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 179 ILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGL 238
+L F G + + + AGA + G ++D VVA P+++ + + +
Sbjct: 75 VLVFATG-DRAEAARAAGADIVGSDELIDEVSKGR---LDFDAVVATPDLMGKVGRLGRV 130
Query: 239 MKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSVEVPVGRLNMEPKQ 295
+ R PN ++GT+ P++ + V + GG I+++V K ++ +G+ + + Q
Sbjct: 131 LGPRGLMPNPKTGTVTPDVVKAVNEIKGGKIEFRVDK------HSNLHFIIGKTSFDDTQ 184
Query: 296 VAENIGKLLKDVQAVRP 312
+ EN G L ++ ++P
Sbjct: 185 LVENYGAALDEILRLKP 201
>UniRef50_Q8D236 Cluster: 50S ribosomal protein L1; n=1;
Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis|Rep: 50S ribosomal protein L1 -
Wigglesworthia glossinidia brevipalpis
Length = 242
Score = 40.3 bits (90), Expect = 0.077
Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 174 EEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLV 233
++E+ I+ F G + K +AGA +AG + D+V++ P + +
Sbjct: 70 KKEKYIVVFASGEDK-KNAYEAGANLAG--MEEVSDKIKNNKKLKIDHVISTPEAMPIVE 126
Query: 234 PIRGLM--KKRFPNVRSGTLDPNLKELVKKF-AGGIQYKVIKDEAQPSFGSVEVPVGRLN 290
+ ++ K PN + GT+ ++K +KK +G + YK +G + +G++N
Sbjct: 127 KLGSILGPKGLMPNPKLGTITKDIKNEIKKIKSGQLNYK------NDKYGIIHTTIGKIN 180
Query: 291 MEPKQVAENIGKLLKDVQAVRPKR-DGLFVTRCLL 324
++ N+ L + +P G+F+ + L
Sbjct: 181 FNNLELKINLLYFLNHLVKTKPTNLKGVFIKKVSL 215
>UniRef50_P96932 Cluster: 50S ribosomal protein L1; n=24;
Bacteria|Rep: 50S ribosomal protein L1 - Mycobacterium
tuberculosis
Length = 235
Score = 39.1 bits (87), Expect = 0.18
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 218 EYDYVVAHPNILTDLVPIRGLMKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDE 274
E+D +A P+ + + I ++ R PN ++GT+ ++ + V GG I ++V K
Sbjct: 110 EFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQ- 168
Query: 275 AQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLM 334
++ +G+ + + K +AEN G + +V ++P + + VS + +
Sbjct: 169 -----ANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGIP 223
Query: 335 IDPFV 339
+DP +
Sbjct: 224 VDPSI 228
>UniRef50_A2QUK8 Cluster: Similarity to ribosomal protein of the
large subunit L1 rplA - Escherichia coli; n=7;
Eurotiomycetidae|Rep: Similarity to ribosomal protein of
the large subunit L1 rplA - Escherichia coli -
Aspergillus niger
Length = 336
Score = 38.7 bits (86), Expect = 0.23
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Query: 165 SLLPHPFPREEERTILAFCK-GAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVV 223
++L P + E I C G KE + AGA + G E+D +
Sbjct: 151 NMLRFPHSVQTESRICVVCPPGTRHEKEARAAGAVLVGEQEVFDAVKAGK---IEFDRCL 207
Query: 224 AHPNILTDL--VPIRGLMKKR--FPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSF 279
HP+ L L + ++ R P+V++GT+ ++ V+ GG Y+ +D
Sbjct: 208 CHPDSLDALNKAGLGRILGPRGLMPSVKTGTVVEDIAVRVEMLRGGTVYRE-RDAV---- 262
Query: 280 GSVEVPVGRLNMEPKQVAENIGKLLKDVQ 308
+ VPVG+L P+Q+ +N+ + ++
Sbjct: 263 --IRVPVGQLGFTPEQLRDNLRATIDQIK 289
>UniRef50_Q8RWT4 Cluster: Putative uncharacterized protein
At2g42710; n=2; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At2g42710 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 415
Score = 38.3 bits (85), Expect = 0.31
Identities = 31/149 (20%), Positives = 69/149 (46%), Gaps = 14/149 (9%)
Query: 167 LPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHP 226
LPH ++ + + F +GA+ ++ + AGA V GG ++D +A P
Sbjct: 232 LPHSVKKDVK--VAFFAEGADA-EDAKAAGADVVGGLELIEEILKSGK--IDFDRCLATP 286
Query: 227 NILTDLVPIRGLMKKR--FPNVRSGTLDPNLKELVKKF-AGGIQYKVIKDEAQPSFGSVE 283
++ + I ++ PN + G++ ++ + VK AG ++++ K +
Sbjct: 287 KMMPRVYKISRILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSI------LH 340
Query: 284 VPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
VP+G+++ + + EN+G + + +P
Sbjct: 341 VPLGKMSFSEEALRENVGAFMNALLLAKP 369
>UniRef50_A7T2A8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1459
Score = 38.3 bits (85), Expect = 0.31
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 254 NLKELVKKFAGGIQ-YKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
++KE K+A G++ + + D+A+P GS+E G +N + K+ EN+ KL ++++ +
Sbjct: 280 DVKEAFAKYADGLEPLRALLDKAEPVLGSLEPVSGDVN-KNKEELENVKKLKEELEGAKD 338
Query: 313 KRDGL 317
K + L
Sbjct: 339 KLNSL 343
>UniRef50_Q5LMQ0 Cluster: 50S ribosomal protein L1; n=101;
Bacteria|Rep: 50S ribosomal protein L1 - Silicibacter
pomeroyi
Length = 232
Score = 38.3 bits (85), Expect = 0.31
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 179 ILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGL 238
+ F +G + +E Q AGA + G E+D +A P+++ + + +
Sbjct: 75 VAVFARGPKA-EEAQAAGADIVGAEDLMETIQSGK---IEFDRCIATPDMMPVVGRLGKI 130
Query: 239 MKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSVEVPVGRLNMEPKQ 295
+ R PN + GT+ ++ + V+ GG +Q+KV K G + VG+++ + +
Sbjct: 131 LGPRNLMPNPKVGTVTMDVAQAVQNAKGGEVQFKVEKA------GVIHAGVGKVSFDEAK 184
Query: 296 VAENIGKLLKDVQAVRP 312
+ EN+ + V +P
Sbjct: 185 LVENVRAFVDAVAKAKP 201
>UniRef50_Q7V478 Cluster: 50S ribosomal protein L1; n=7; cellular
organisms|Rep: 50S ribosomal protein L1 -
Prochlorococcus marinus (strain MIT 9313)
Length = 235
Score = 38.3 bits (85), Expect = 0.31
Identities = 40/177 (22%), Positives = 82/177 (46%), Gaps = 18/177 (10%)
Query: 180 LAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLM 239
+A E + E + AGA +AG ++D ++A P+++ + + ++
Sbjct: 74 IAVISRGEKLAEAKTAGAELAGDDDLVESIGKGQ---MDFDLLIATPDMMPKVAKLGRVL 130
Query: 240 KKR--FPNVRSGTLDPNLKELVKKF-AGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQV 296
R PN ++GT+ +L +K+F AG ++++ D A G V V G+ + +
Sbjct: 131 GPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRA--DRA----GIVHVRFGKASFSADAL 184
Query: 297 AENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVFVDRTLSKEVQDDS 353
EN+ L + + +P + L ++ ST + P V VD T +++++D+
Sbjct: 185 LENLKTLQETIDRNKPSGAKGRYWKSLYIT--ST----MGPSVEVDVTALQDLEEDA 235
>UniRef50_Q38WC5 Cluster: Hypothetical membrane protein; n=1;
Lactobacillus sakei subsp. sakei 23K|Rep: Hypothetical
membrane protein - Lactobacillus sakei subsp. sakei
(strain 23K)
Length = 847
Score = 36.7 bits (81), Expect = 0.95
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 98 KAIPIDDVYPMKYYKWVVYTAEDAVKAHQE---THHPTMFNAPDAFIFAKIEFNMTGI-K 153
K I + YP + W V T +H TH PT+F +FA + F + I K
Sbjct: 266 KTIAMTSFYPTPQFGWEVLTQFQVGGSHYTQRLTHEPTLFVGTLVLLFAVLYFTLPQIRK 325
Query: 154 QTRFMDSFTRLSL 166
Q ++ + F LSL
Sbjct: 326 QAKYANGFLVLSL 338
>UniRef50_Q6KIF1 Cluster: 50S ribosomal protein L1; n=7;
Mycoplasma|Rep: 50S ribosomal protein L1 - Mycoplasma
mobile
Length = 233
Score = 36.7 bits (81), Expect = 0.95
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 217 FEYDYVVAHPNILTDLVPIRGLM--KKRFPNVRSGTLDPNLKELVKKF-AGGIQYKVIKD 273
F++D +V P ++ L ++ K PN ++GT+ PN+ + V++ G Y+ K
Sbjct: 114 FDFDIMVTDPKMMPTLGKYGKVLGPKGLMPNPKTGTVTPNIAKAVEEIKKGKANYRADKG 173
Query: 274 EAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRP 312
G + +G+++M + EN L+ ++ ++P
Sbjct: 174 ------GIINSSIGKVSMGTTSLVENAKVLIDTIRKLKP 206
>UniRef50_A6PR74 Cluster: Ribosomal protein L1; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein L1 -
Victivallis vadensis ATCC BAA-548
Length = 235
Score = 35.9 bits (79), Expect = 1.7
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 172 PREEERTI-LAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILT 230
PR +T+ +A +L ++ +DAGA G ++D ++A P+ +
Sbjct: 67 PRGTGKTVRVAVVADGQLAQDAKDAGADFVGYEDIVQKIKDGWQ---DFDILIATPDAMR 123
Query: 231 DLVPIRGLMKKR--FPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGS-VEVPVG 287
+ P+ + R PN ++GT+ ++ V++ GG + E + G+ V VP G
Sbjct: 124 LVRPLGRQLGPRGLMPNPKTGTVTESVGTAVREAKGG------RAEFRADRGACVHVPFG 177
Query: 288 RLNMEPKQVAENIGKLLKDVQAVRP-KRDGLFVTRCLL 324
+++ E + EN ++ + +P G ++ C +
Sbjct: 178 KMSFESDALKENFDVIVDALIKAKPTTAKGAYILSCTI 215
>UniRef50_Q5YPC5 Cluster: 50S ribosomal protein L1; n=125;
Bacteria|Rep: 50S ribosomal protein L1 - Nocardia
farcinica
Length = 237
Score = 35.5 bits (78), Expect = 2.2
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 15/163 (9%)
Query: 179 ILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGL 238
++ F G E E + AGA G ++D +A P+ + + I +
Sbjct: 75 VIVFAAG-EKAAEAEAAGADAVGAEDLIERIQGGW---LDFDAAIATPDQMAKVGRIARV 130
Query: 239 MKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSVEVPVGRLNMEPKQ 295
+ R PN ++GT+ ++ + V GG I ++V K ++ +G+ + + +
Sbjct: 131 LGPRGLMPNPKTGTVTTDVAKAVSDIKGGKINFRVDKQ------ANLHFVIGKASFDEAK 184
Query: 296 VAENIGKLLKDVQAVRPK-RDGLFVTRCLLVSPPSTEQLMIDP 337
+ EN G L ++ +P G +V + + VS + + +DP
Sbjct: 185 LVENYGAALDEILRAKPSTAKGRYVKK-VTVSTNTGPGIPVDP 226
>UniRef50_Q6A6K3 Cluster: 50S ribosomal protein L1; n=20;
Bacteria|Rep: 50S ribosomal protein L1 -
Propionibacterium acnes
Length = 232
Score = 34.7 bits (76), Expect = 3.8
Identities = 34/162 (20%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 179 ILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGL 238
+L F G E + ++AGA G ++D VVA P+++ + + +
Sbjct: 74 VLVFATG-EKAEAAREAGADEVGDDDLIAKVQGGY---LDFDSVVATPDMMGKVGRLGRV 129
Query: 239 MKKR--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSVEVPVGRLNMEPKQ 295
+ R PN ++GT+ ++ + V GG I+++ + + ++ +G+++ ++
Sbjct: 130 LGPRGLMPNPKTGTVTMDVAKAVSDIKGGKIEFRTDR------YANLHFLIGKVSFGSEK 183
Query: 296 VAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDP 337
+AEN L ++ ++P R + VS + IDP
Sbjct: 184 LAENYFAALDEILRLKPNAAKGRYLRKITVSSTMGPGVQIDP 225
>UniRef50_Q92XZ1 Cluster: Putative uncharacterized protein; n=3;
Alphaproteobacteria|Rep: Putative uncharacterized
protein - Rhizobium meliloti (Sinorhizobium meliloti)
Length = 220
Score = 34.3 bits (75), Expect = 5.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 288 RLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQL 333
R NM P +VA IG L+ D++ + P R G ++ PP E L
Sbjct: 102 RFNMPPSEVAMGIGCLVHDIRELSPGRTGNDPEIMIVAPPPMLEDL 147
>UniRef50_A5FC37 Cluster: Putative uncharacterized protein
precursor; n=1; Flavobacterium johnsoniae UW101|Rep:
Putative uncharacterized protein precursor -
Flavobacterium johnsoniae UW101
Length = 1136
Score = 34.3 bits (75), Expect = 5.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 216 LFEYDYVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFA-----GGIQYKV 270
+F Y+Y+ PN +T +P +G+ +PNV D L+E KK GI ++
Sbjct: 914 IFNYEYLSPRPNTVTLQLPKQGIGNWCYPNVSVQIDDKGLREKAKKTGKISTPNGILFQT 973
Query: 271 IKDEAQ 276
DE Q
Sbjct: 974 PSDENQ 979
>UniRef50_Q870V5 Cluster: Related to ribosomal protein L1; n=3;
Sordariomycetes|Rep: Related to ribosomal protein L1 -
Neurospora crassa
Length = 303
Score = 34.3 bits (75), Expect = 5.0
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 170 PFPREEERTILAFC-KGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNI 228
P P + + I C +G+ L +E ++ GA +AG F ++ ++ H
Sbjct: 121 PTPVKTDTRIAVICPEGSALQEEAKNLGAVMAGEETLFEAIRSGN---FPFNKLLCHTES 177
Query: 229 LTDL--VPIRGLM--KKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEV 284
L + L+ K P+ ++ T+ NL+ + G DE + G V +
Sbjct: 178 EGALRKANVGKLLGPKGLMPSGKTKTITNNLEATFRDMIG-------MDEYRERNGVVRM 230
Query: 285 PVGRLNMEPKQVAENIGKLLKDVQAVRPKRD 315
VG+L PKQ+AENI + +++ K D
Sbjct: 231 AVGQLGFTPKQLAENIRVFMAKIKSDIGKLD 261
>UniRef50_Q6N4R5 Cluster: 50S ribosomal protein L1; n=28;
Bacteria|Rep: 50S ribosomal protein L1 -
Rhodopseudomonas palustris
Length = 229
Score = 33.9 bits (74), Expect = 6.7
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 182 FCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKK 241
F +GA+ E + AGA V G +D +A P+++ + + ++
Sbjct: 77 FARGAKA-DEAKAAGADVVGAEDLVEQVQAGN---INFDRCIATPDMMPLVGRLGKVLGP 132
Query: 242 R--FPNVRSGTLDPNLKELVKKFAGG-IQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAE 298
R PN + GT+ ++ VK GG ++++V K G ++ VG+ + + ++ E
Sbjct: 133 RGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKA------GIIQAGVGKASFDADKLVE 186
Query: 299 NIGKLLKDVQAVRPK-RDGLFVTRCLLVS 326
NI L V +P G ++ R + S
Sbjct: 187 NIKALADAVNKAKPSGAKGTYIQRVAVSS 215
>UniRef50_P90493 Cluster: RS1 protein; n=1; Human herpesvirus 2|Rep:
RS1 protein - Human herpesvirus 2 (HHV-2) (Human herpes
simplex virus 2)
Length = 1318
Score = 33.5 bits (73), Expect = 8.8
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 273 DEAQPSFG-SVEVPVGRLNMEPKQVA---ENIGKLLKDVQAVRPKRDGLFVTRCLLVSPP 328
DEA P+ G +V+ P + P+Q+A + + ++ + + P+RDG SPP
Sbjct: 90 DEAAPASGEAVDEPAADGVVSPRQLALLASMVDEAVRTIPSPPPERDGAQEEAARSPSPP 149
Query: 329 STEQLMIDPFVFVDRTLSKEVQDDSDDED 357
T + D + + + DD DD D
Sbjct: 150 RTPSMRAD---YGEENDDDDDDDDDDDRD 175
>UniRef50_A1A3N2 Cluster: Glycosyl hydrolase; n=2; Bifidobacterium
adolescentis|Rep: Glycosyl hydrolase - Bifidobacterium
adolescentis (strain ATCC 15703 / DSM 20083)
Length = 788
Score = 33.5 bits (73), Expect = 8.8
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 87 TVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIE 146
T++N + +IP D+ P + T ++AV+A +ET P F+ F+ E
Sbjct: 151 TMLNGWWDYAIVSIPEDETAPKWRKTAAMLTRDEAVRAVKETAIPQTFDGKILVPFSP-E 209
Query: 147 FNMTGIKQTRFMDSFTRLSLLPHPFPREEERTI 179
++G+ QT + D+ + HP E T+
Sbjct: 210 SALSGVHQTIYPDNLLWYRTVVHPVTLGGEETV 242
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,497,262
Number of Sequences: 1657284
Number of extensions: 14020939
Number of successful extensions: 32414
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 32378
Number of HSP's gapped (non-prelim): 46
length of query: 364
length of database: 575,637,011
effective HSP length: 102
effective length of query: 262
effective length of database: 406,594,043
effective search space: 106527639266
effective search space used: 106527639266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 73 (33.5 bits)
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