GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002208-TA|BGIBMGA002208-PA|IPR002143|Ribosomal protein
L1
         (364 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   8.0  
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    22   8.0  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    22   8.0  
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    22   8.0  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 167 LPHPFPREEERTILAFCKGAELIK 190
           L HP+P E+++  LA   G  +++
Sbjct: 357 LTHPYPSEDQKKQLAQDTGLTILQ 380


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRL 43


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRL 43



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 91  LEVEPSDTIENVKAKIQDKEGIPPDQQRL 119



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRL 195



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 243 LEVEPSDTIENVKAKIQDKEGIPPDQQRL 271



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 319 LEVEPSDTIENVKAKIQDKEGIPPDQQRL 347



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 471 LEVEPSDTIENVKAKIQDKEGIPPDQQRL 499



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 547 LEVEPSDTIENVKAKIQDKEGIPPDQQRL 575



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 623 LEVEPSDTIENVKAKIQDKEGIPPDQQRL 651


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGL 317
           L +EP    EN+   ++D + + P +  L
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRL 43


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,189
Number of Sequences: 317
Number of extensions: 3012
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 12
length of query: 364
length of database: 114,650
effective HSP length: 58
effective length of query: 306
effective length of database: 96,264
effective search space: 29456784
effective search space used: 29456784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)