Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002208-TA|BGIBMGA002208-PA|IPR002143|Ribosomal protein
L1
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz... 61 3e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 0.78
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 29 1.4
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 28 1.8
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 28 2.4
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 3.1
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.2
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 27 5.5
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 27 5.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 9.6
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca... 26 9.6
>SPAC1610.02c |||mitochondrial ribosomal protein subunit
L1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 253
Score = 60.9 bits (141), Expect = 3e-10
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 152 IKQTRFMDSFTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXX 211
+K R S PHPF +E I F KGA + L+ GAT G
Sbjct: 75 LKSNRRAPSARGQIAFPHPF--QEPPKICVFAKGAAADEALK-LGATYVGAEDLVKKIQT 131
Query: 212 XXXXLFEYDYVVAHPNILTDLVPIRGLM--KKRFPNVRSGTLDPNLKELVKKFAGGIQYK 269
E+ AHPN L + L+ K+ P+++ GT+ LK L++ + Y+
Sbjct: 132 EP---LEFSKCFAHPNSAELLPQVAKLLGSKRLMPSIKRGTISDELKPLIESALTAVDYR 188
Query: 270 VIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDG 316
Q GS+ +PVG+L K++ ENI L+ +V+ K G
Sbjct: 189 ------QNDAGSINLPVGKLGFSDKELQENIEALVSNVRFTLAKLPG 229
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 29.5 bits (63), Expect = 0.78
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 235 IRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQY----KVIKDEAQPSFGSVEVPVGRLN 290
++ L+++ P ++S + +++ + FA ++ +V++DE + V+ N
Sbjct: 235 LQNLLRESLPTLKSSGQYVSKEDITELFAEQVKCSEIAQVVRDEQDTAKDPVKALTSTNN 294
Query: 291 MEPKQVAENIGKLLKDVQ 308
+E + AE+IGK++ Q
Sbjct: 295 VEEEDPAEDIGKIIASGQ 312
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 253 PNLKELVKKF-AGGIQYKVIKDEAQPSFGSVEVPVGRL 289
PNL +L+K+ A I+Y+ +E +P VE P+G L
Sbjct: 105 PNLLDLLKQLSADAIKYQAFPNEKKPDEVYVEDPLGNL 142
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 100 IPIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNA-PDAFIFAKIEFNMTGIKQTRFM 158
+P+ ++YP + + TA+ A K E+H+ F + F F + ++ +K+ ++
Sbjct: 392 VPVQEIYPTAPSEVLSSTADPAAKGKIESHYHGAFGGIEEVFTFTRCLSRLSEMKKQSWI 451
Query: 159 DS 160
S
Sbjct: 452 HS 453
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 131 PTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHP-FPREEERTI 179
PT+ + D ++ ++E + T T F D + L ++ HP F + RT+
Sbjct: 89 PTLLTSVDPVLYQQLEASSTNDISTVFEDESSSLPIILHPKFSSMQVRTV 138
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 334 MIDPFVFVDRTLSKEVQDDSDDEDEPV 360
+ID + +D + EV DD ++EDE V
Sbjct: 237 IIDKIIQIDVEIQVEVDDDDEEEDEVV 263
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 325 VSPPSTEQLMIDPFVFVDRTLSKEVQDDSDDEDEPVAATA 364
+ P T+Q DP V ++ KE+Q D VA A
Sbjct: 176 IIPSMTQQFDKDPSTLVQSSIDKEIQVKEDGTTSSVAVNA 215
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.1 bits (57), Expect = 4.2
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 282 VEVPVGRLNMEPKQVAE-NIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLMID-PFV 339
+++ V L+ E +Q + + KLLK Q K+ LF+ + P L + +
Sbjct: 669 MDLVVDALDEESRQALDVELNKLLKWNQR---KKSALFLRKTTKYIPGEETSLPVTMDEL 725
Query: 340 FVDRTLSKEVQDDSDDEDE 358
+D + E++ D DD+DE
Sbjct: 726 GIDEEIMAELRGDEDDQDE 744
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/70 (22%), Positives = 25/70 (35%)
Query: 90 NKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNM 149
+K + IP D PM Y A +K+ T P N + + FNM
Sbjct: 315 SKESEKDQTPIPEDVPSPMDTLSQANYGAFALIKSFPSTPVPDFLNFSHKSVMGRSTFNM 374
Query: 150 TGIKQTRFMD 159
+ +F +
Sbjct: 375 PNFPEPKFFE 384
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 81 GRKVVKTV-VNKHFSDEHKAIPIDDVYPMKY 110
G+K + V + H ++ +AIP DD+ MKY
Sbjct: 307 GQKAITGVMIESHLNEGKQAIPEDDLSSMKY 337
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 155 TRFMDSFTRLSLLPHPFPREEERTI 179
T FMD R+ + HP P++ +R +
Sbjct: 248 TMFMDRHLRVDSVSHPMPQDTKRCV 272
>SPBC336.13c |||mitochondrial inner membrane peptidase complex
catalytic subunit 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 9.6
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 254 NLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPK 313
N +EL+ K G++Y ++K V VP G + +E + +I D P
Sbjct: 85 NPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSI-----DSNKFGPV 139
Query: 314 RDGLFVTRCLLVSPPSTEQLMID 336
GL + + + P + ID
Sbjct: 140 STGLITAKVIAILFPFSRAGRID 162
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,927
Number of Sequences: 5004
Number of extensions: 59103
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 12
length of query: 364
length of database: 2,362,478
effective HSP length: 74
effective length of query: 290
effective length of database: 1,992,182
effective search space: 577732780
effective search space used: 577732780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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