GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002208-TA|BGIBMGA002208-PA|IPR002143|Ribosomal protein
L1
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    49   5e-06
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621...    29   5.8  

>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 31/136 (22%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 180 LAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLM 239
           +A     E I + + AGA + GG               E+D ++A P+++  +  +  ++
Sbjct: 208 IAVLTQGEKIDQARAAGADIVGGDDLIDQIKGG---FMEFDKLIASPDMMPKVAGLGKIL 264

Query: 240 KKR--FPNVRSGTLDPNLKELVKKF-AGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQV 296
             R   PN ++GT+ PN+ + +++F  G ++Y+V K       G V +P G+++   + +
Sbjct: 265 GPRGLMPNPKAGTVSPNITQAIEEFKKGKVEYRVDKT------GIVHIPFGKVDFPEEDL 318

Query: 297 AENIGKLLKDVQAVRP 312
             N   +++ V+  +P
Sbjct: 319 IANFMAVVRSVERNKP 334


>11_01_0737 +
           6211149-6211466,6212022-6212183,6212290-6213101,
           6213188-6213395,6214157-6214364,6214752-6215206,
           6215585-6216011,6216391-6216471,6216571-6216761,
           6216855-6216998
          Length = 1001

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 286 VGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPST 330
           +G L+ E K++ E I   +KD   ++  +D L+    LL  PP T
Sbjct: 405 LGGLSKESKEIKEIISFSIKDQIGLQRVKDNLWYRGILLSGPPGT 449


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,732,051
Number of Sequences: 37544
Number of extensions: 369621
Number of successful extensions: 930
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 2
length of query: 364
length of database: 14,793,348
effective HSP length: 83
effective length of query: 281
effective length of database: 11,677,196
effective search space: 3281292076
effective search space used: 3281292076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)