Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002208-TA|BGIBMGA002208-PA|IPR002143|Ribosomal protein
L1
(364 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051800-1|AAK93224.1| 354|Drosophila melanogaster LD31571p pro... 303 2e-82
AE014297-728|AAF54214.2| 354|Drosophila melanogaster CG7494-PA ... 303 2e-82
BT015211-1|AAT94440.1| 1049|Drosophila melanogaster RE48574p pro... 31 1.9
AF006601-1|AAB62567.1| 882|Drosophila melanogaster Knockout pro... 31 1.9
AE014296-3466|AAF51676.1| 1049|Drosophila melanogaster CG10573-P... 31 1.9
AE014297-3309|AAF56121.1| 718|Drosophila melanogaster CG6759-PA... 31 2.5
BT029116-1|ABJ17049.1| 702|Drosophila melanogaster IP15292p pro... 31 3.3
AE014297-3425|AAS65202.1| 909|Drosophila melanogaster CG31140-P... 31 3.3
AE014297-3424|AAS65201.1| 1055|Drosophila melanogaster CG31140-P... 31 3.3
AE014297-3423|AAF56214.2| 1564|Drosophila melanogaster CG31140-P... 31 3.3
>AY051800-1|AAK93224.1| 354|Drosophila melanogaster LD31571p
protein.
Length = 354
Score = 303 bits (744), Expect = 2e-82
Identities = 140/299 (46%), Positives = 200/299 (66%), Gaps = 4/299 (1%)
Query: 65 IQVEVTKVGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
++VEV KVGFIPHNQR +K+ +KH D K +P DD Y +YY+W VY+ ++A++
Sbjct: 46 VKVEVKKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQEAIQC 105
Query: 125 HQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPFPREEERTILAFCK 184
H+ETHHP+M+N P+A + IE NM K TRF+D+F R++++PH F EER I+ F K
Sbjct: 106 HRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPHKFDHGEERKIIVFTK 165
Query: 185 GAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRFP 244
G + E ++AGA++ GG L +Y YV+AHPNIL +LV +RGLMK++FP
Sbjct: 166 GNNEVLEAREAGASLVGGVELIKDITSGELLLSDYQYVIAHPNILAELVALRGLMKRKFP 225
Query: 245 NVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLL 304
N +S TL NL E++ KF+ GI Y KDE Q +FG + VG L+M+ +++ ENI LL
Sbjct: 226 NPKSETLGTNLAEMIVKFSSGISYSAAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLL 285
Query: 305 KDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVFV----DRTLSKEVQDDSDDEDEP 359
+D+ +RPKR+G F+TR LL SPPS+EQL IDPFV+V D++ +K +D + + EP
Sbjct: 286 QDINTMRPKREGRFITRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEP 344
>AE014297-728|AAF54214.2| 354|Drosophila melanogaster CG7494-PA
protein.
Length = 354
Score = 303 bits (744), Expect = 2e-82
Identities = 140/299 (46%), Positives = 200/299 (66%), Gaps = 4/299 (1%)
Query: 65 IQVEVTKVGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
++VEV KVGFIPHNQR +K+ +KH D K +P DD Y +YY+W VY+ ++A++
Sbjct: 46 VKVEVKKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQEAIQC 105
Query: 125 HQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDSFTRLSLLPHPFPREEERTILAFCK 184
H+ETHHP+M+N P+A + IE NM K TRF+D+F R++++PH F EER I+ F K
Sbjct: 106 HRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPHKFDHGEERKIIVFTK 165
Query: 185 GAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYDYVVAHPNILTDLVPIRGLMKKRFP 244
G + E ++AGA++ GG L +Y YV+AHPNIL +LV +RGLMK++FP
Sbjct: 166 GNNEVLEAREAGASLVGGVELIKDITSGELLLSDYQYVIAHPNILAELVALRGLMKRKFP 225
Query: 245 NVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLL 304
N +S TL NL E++ KF+ GI Y KDE Q +FG + VG L+M+ +++ ENI LL
Sbjct: 226 NPKSETLGTNLAEMIVKFSSGISYSAAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLL 285
Query: 305 KDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVFV----DRTLSKEVQDDSDDEDEP 359
+D+ +RPKR+G F+TR LL SPPS+EQL IDPFV+V D++ +K +D + + EP
Sbjct: 286 QDINTMRPKREGRFITRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEP 344
>BT015211-1|AAT94440.1| 1049|Drosophila melanogaster RE48574p
protein.
Length = 1049
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 254 NLKELVKKFAGGIQYK--VIKDEAQPSFGSVEVP--VGRLNMEPKQVAENIGKL 303
N ++L + A GI YK V+K+E+QP+ S + P + L + ++A ++G L
Sbjct: 812 NSRKLCLQLANGIAYKNNVLKNESQPNSPSADAPLKMAALAKQDFEIAGSVGNL 865
>AF006601-1|AAB62567.1| 882|Drosophila melanogaster Knockout
protein.
Length = 882
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 254 NLKELVKKFAGGIQYK--VIKDEAQPSFGSVEVP--VGRLNMEPKQVAENIGKL 303
N ++L + A GI YK V+K+E+QP+ S + P + L + ++A ++G L
Sbjct: 812 NSRKLCLQLANGIAYKNNVLKNESQPNSPSADAPLKMAALAKQDFEIAGSVGNL 865
>AE014296-3466|AAF51676.1| 1049|Drosophila melanogaster CG10573-PA
protein.
Length = 1049
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 254 NLKELVKKFAGGIQYK--VIKDEAQPSFGSVEVP--VGRLNMEPKQVAENIGKL 303
N ++L + A GI YK V+K+E+QP+ S + P + L + ++A ++G L
Sbjct: 812 NSRKLCLQLANGIAYKNNVLKNESQPNSPSADAPLKMAALAKQDFEIAGSVGNL 865
>AE014297-3309|AAF56121.1| 718|Drosophila melanogaster CG6759-PA
protein.
Length = 718
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 238 LMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVA 297
L+ R S ++P++ + +K+F +Q D P +V+VP + P Q
Sbjct: 238 LISARNAEEMSPIVNPDILQFIKEFTARVQQSGSSDTQMPKVSAVKVP-----LTPSQFM 292
Query: 298 ENIGKLLKDVQA 309
K+L+D++A
Sbjct: 293 SPAQKVLEDLKA 304
>BT029116-1|ABJ17049.1| 702|Drosophila melanogaster IP15292p
protein.
Length = 702
Score = 30.7 bits (66), Expect = 3.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 72 VGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
VG +P R + ++NK+ +DE+K I I +Y Y VV T ED++KA
Sbjct: 201 VGNLPTGLSQRNY-EQILNKYVTDENKFISIGPIY--YEYGSVVLTFEDSMKA 250
>AE014297-3425|AAS65202.1| 909|Drosophila melanogaster CG31140-PC,
isoform C protein.
Length = 909
Score = 30.7 bits (66), Expect = 3.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 72 VGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
VG +P R + ++NK+ +DE+K I I +Y Y VV T ED++KA
Sbjct: 431 VGNLPTGLSQRNY-EQILNKYVTDENKFISIGPIY--YEYGSVVLTFEDSMKA 480
>AE014297-3424|AAS65201.1| 1055|Drosophila melanogaster CG31140-PB,
isoform B protein.
Length = 1055
Score = 30.7 bits (66), Expect = 3.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 72 VGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
VG +P R + ++NK+ +DE+K I I +Y Y VV T ED++KA
Sbjct: 525 VGNLPTGLSQRNY-EQILNKYVTDENKFISIGPIY--YEYGSVVLTFEDSMKA 574
>AE014297-3423|AAF56214.2| 1564|Drosophila melanogaster CG31140-PA,
isoform A protein.
Length = 1564
Score = 30.7 bits (66), Expect = 3.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 72 VGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKYYKWVVYTAEDAVKA 124
VG +P R + ++NK+ +DE+K I I +Y Y VV T ED++KA
Sbjct: 1034 VGNLPTGLSQRNY-EQILNKYVTDENKFISIGPIY--YEYGSVVLTFEDSMKA 1083
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,008
Number of Sequences: 52641
Number of extensions: 625283
Number of successful extensions: 1597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1595
Number of HSP's gapped (non-prelim): 10
length of query: 364
length of database: 24,830,863
effective HSP length: 86
effective length of query: 278
effective length of database: 20,303,737
effective search space: 5644438886
effective search space used: 5644438886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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