Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002208-TA|BGIBMGA002208-PA|IPR002143|Ribosomal protein
L1
(364 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036702-8|AAR85905.1| 377|Caenorhabditis elegans Hypothetical ... 149 2e-36
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 32 0.74
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 32 0.74
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 32 0.74
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical pr... 29 5.2
U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical pr... 28 9.1
>AF036702-8|AAR85905.1| 377|Caenorhabditis elegans Hypothetical
protein F33D4.5 protein.
Length = 377
Score = 149 bits (362), Expect = 2e-36
Identities = 79/250 (31%), Positives = 133/250 (53%)
Query: 101 PIDDVYPMKYYKWVVYTAEDAVKAHQETHHPTMFNAPDAFIFAKIEFNMTGIKQTRFMDS 160
P DV+ ++K YT +A+ H+E P+++N P+A I ++E NMT +QT+ +
Sbjct: 97 PTLDVFIKSHFKTQYYTVSEALDMHRELQSPSIYNNPNAPIRLRLELNMTTERQTKMVTG 156
Query: 161 FTRLSLLPHPFPREEERTILAFCKGAELIKELQDAGATVAGGTXXXXXXXXXXXXLFEYD 220
+ +PHPF E+RTILAF +L + ++GA +A G +YD
Sbjct: 157 SDEIVPVPHPFNHNEKRTILAFANDVKLQELAVESGAEMALGQDTIKKIIKGQFRTDDYD 216
Query: 221 YVVAHPNILTDLVPIRGLMKKRFPNVRSGTLDPNLKELVKKFAGGIQYKVIKDEAQPSFG 280
+ V+H ++ + ++P+RG++K RFP +G L NL EL++KF G++ + D P +G
Sbjct: 217 FCVSHSDMGSSILPLRGILKMRFPTRANGGLGENLPELIEKFKNGVKLNIKGDPVYPIWG 276
Query: 281 SVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPSTEQLMIDPFVF 340
+ VGRL+M + + NI ++ A R G FV R LL++ P E ID +
Sbjct: 277 LSDCVVGRLSMPNEHIEANIATVIAAACAHRNPALGSFVNRALLMTIPGEENYAIDVKPW 336
Query: 341 VDRTLSKEVQ 350
+ +E++
Sbjct: 337 IPIPTEEEIE 346
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 31.9 bits (69), Expect = 0.74
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 220 DYVVAHPNILTDLVPIRGLMKKRFPNVRSG--TLDPNL-KELVKKFAGGIQYKVIKDEAQ 276
D + H DL R ++ N++ +D NL K L +K A Q ++DE
Sbjct: 931 DRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEKAAKENQIHSLQDE-- 988
Query: 277 PSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKR 314
S + +G++N E K + EN +L+ D+QA K+
Sbjct: 989 --MNSQDETIGKINKEKKLLEENNRQLVDDLQAEEAKQ 1024
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 31.9 bits (69), Expect = 0.74
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 220 DYVVAHPNILTDLVPIRGLMKKRFPNVRSG--TLDPNL-KELVKKFAGGIQYKVIKDEAQ 276
D + H DL R ++ N++ +D NL K L +K A Q ++DE
Sbjct: 931 DRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEKAAKENQIHSLQDE-- 988
Query: 277 PSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKR 314
S + +G++N E K + EN +L+ D+QA K+
Sbjct: 989 --MNSQDETIGKINKEKKLLEENNRQLVDDLQAEEAKQ 1024
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 31.9 bits (69), Expect = 0.74
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 220 DYVVAHPNILTDLVPIRGLMKKRFPNVRSG--TLDPNL-KELVKKFAGGIQYKVIKDEAQ 276
D + H DL R ++ N++ +D NL K L +K A Q ++DE
Sbjct: 931 DRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEKAAKENQIHSLQDE-- 988
Query: 277 PSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKR 314
S + +G++N E K + EN +L+ D+QA K+
Sbjct: 989 --MNSQDETIGKINKEKKLLEENNRQLVDDLQAEEAKQ 1024
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 256 KELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAVRPKRD 315
K+ +K A Q + ++DE Q S + + +LN E K E KLL+D+QA K +
Sbjct: 973 KQESEKQAKDHQIRSLQDEIQ----SQDEVISKLNKEKKHQEEVNRKLLEDIQAEEDKVN 1028
Query: 316 GLFVTRCLLVS 326
L T+ L S
Sbjct: 1029 HLNKTKAKLES 1039
>Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical
protein R05D7.4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 66 QVEVTKVGFIPHNQRGRKVVKTVVNKHFSDEHKAIPIDDVYPMKY 110
+ + T+V + H+ G+ V++ ++ +SD + + ++DV P Y
Sbjct: 112 ETKKTRVNLLGHSMGGKIVMRLAIDSKWSDRIEKLIVEDVSPKGY 156
>Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical
protein F35H8.3 protein.
Length = 422
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 116 YTAEDAVKAHQETHHPTMFNA 136
+T EDA++ HQ T HP F++
Sbjct: 264 FTTEDALRHHQSTAHPATFDS 284
>U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical
protein F48E8.4 protein.
Length = 816
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 251 LDPNLKELVKKFAGGIQYKVIKDEAQPSFGSVEVPVGRLNMEPKQVAENIGKLLKDVQAV 310
LD +++++ G++ +++ D + P++ ++ V N P+Q+ GK LK +V
Sbjct: 501 LDEVWEDIIELSTNGLESELL-DSSSPNYKAIYDMVDIGNASPEQLKTKNGKNLKFTVSV 559
Query: 311 RPKRD 315
+RD
Sbjct: 560 SAQRD 564
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,361,119
Number of Sequences: 27539
Number of extensions: 325297
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 9
length of query: 364
length of database: 12,573,161
effective HSP length: 82
effective length of query: 282
effective length of database: 10,314,963
effective search space: 2908819566
effective search space used: 2908819566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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