GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002208-TA|BGIBMGA002208-PA|IPR002143|Ribosomal protein
L1
         (364 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   5.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 78  NQRGRKVVKTVVNKHFSDEHK--AIPIDDVYPM-KYYKW 113
           +++G K++   V  H SD+H+   + + ++ P   YY W
Sbjct: 110 HEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYIW 148


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 78  NQRGRKVVKTVVNKHFSDEHK--AIPIDDVYPM-KYYKW 113
           +++G K++   V  H SD+H+   + + ++ P   YY W
Sbjct: 110 HEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYIW 148


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 289 LNMEPKQVAENIGKLLKDVQAVRPKRDGLFVTRCLLVSPPST 330
           LN+        +   L+ V+  R +  G+ V R  +++PPS+
Sbjct: 399 LNLPGNDARRRVEAALEAVEEERQREYGIRVERDPILTPPSS 440


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,512
Number of Sequences: 429
Number of extensions: 3284
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 364
length of database: 140,377
effective HSP length: 59
effective length of query: 305
effective length of database: 115,066
effective search space: 35095130
effective search space used: 35095130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)