Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002206-TA|BGIBMGA002206-PA|undefined
(225 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337... 36 0.035
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 29 4.1
04_04_0892 + 29136474-29136483,29137558-29137653,29137747-29137940 29 4.1
08_02_1488 + 27485154-27485390,27485441-27485968 28 5.4
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182... 28 5.4
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101... 28 7.1
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243... 28 7.1
12_02_1180 + 26727171-26727239,26728782-26729642 27 9.4
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 27 9.4
09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709... 27 9.4
06_03_1300 + 29154942-29154997,29155390-29155554,29156169-291562... 27 9.4
05_05_0176 - 22968068-22968630,22968729-22968861,22968943-229691... 27 9.4
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 27 9.4
>03_02_0755 +
10932897-10933010,10933446-10933577,10933666-10933750,
10934668-10934831,10934911-10935357
Length = 313
Score = 35.5 bits (78), Expect = 0.035
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 107 PSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRFDLTDPNAEVEIFEPRYHGRLKEET 166
P+ RI L E +N S + DIF +F + P + E YHGR++ +
Sbjct: 12 PAVKRI-LQEVKEMQSNPSPDFMAMPLEEDIFEWQFAILGPR-DSEFEGGIYHGRIQLPS 69
Query: 167 KEALKCPEGYIMTPNGCTVRNSKMIISVPNQCPIGYRQDW 206
K P ++TP+G K+ +S+ N P ++ W
Sbjct: 70 DYPFKPPSFMLLTPSGRFEIQKKICLSISNYHPEHWQPSW 109
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 79 DKEKSCLTLFFDQVAKIFKHLFYGDVEKPSNSRIELLESDFAVTNDSGTSREISN 133
D K CL + +IF +L + D S S ++ ++ A+ N+ G +++N
Sbjct: 195 DSIKQCLITTVESSLRIFAYLAFADTNSVS-SITDVTSNEVAICNNDGKDAKLAN 248
>04_04_0892 +
29136474-29136483,29137558-29137653,29137747-29137940
Length = 99
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 46 EISTSQIEKPIGVPENGTSTTQQKH-----ENETVLREDKEKSCLTLF 88
E +T QI+ G+P T TT QKH N++VL ED+ L F
Sbjct: 22 ENATRQIKPVNGLPRLMTITTPQKHGKENNSNDSVLTEDENIEPLVAF 69
>08_02_1488 + 27485154-27485390,27485441-27485968
Length = 254
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 5 HVFIAITFMKYSKCYVIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTS 64
H IA + + Y +D GK+ ++ ++ + ++E S S +E +G NG +
Sbjct: 118 HSDIATMCVSKTSKYTHQDRGKIGKLGHGSQRGDVYRRLESEASKSAVESLVGNGRNGRT 177
Query: 65 TTQQK 69
T+++
Sbjct: 178 LTERR 182
>07_03_0249 -
15816515-15816868,15817749-15817958,15818051-15818245,
15818318-15818393,15819982-15820021,15820155-15820283,
15820363-15820405
Length = 348
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 23 DSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPE 60
++GKVD + L+RK+E+L K ++ K +P+
Sbjct: 148 EAGKVDEAEALMRKVELLNAEKTALTNQADNKVAMLPQ 185
>12_02_0025 +
12408933-12409464,12409590-12409686,12410121-12410127,
12412339-12412465,12412907-12413136
Length = 330
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 20 VIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKP-------IGVPENGTSTTQQKHEN 72
++ + G + + Q + L++L+ T+ ++P + VP G QQK EN
Sbjct: 164 MVSNMGWSEERLQTYQVLQVLESDSATYYTADFKEPPNLHTTFVFVPNKGVQNIQQKEEN 223
Query: 73 ETVLREDKEKSCLTLFFD 90
+ +++++ ++ D
Sbjct: 224 DVTEKKEEKHEAPAIYED 241
>06_03_1222 -
28521799-28521900,28521952-28522029,28522292-28524335,
28525188-28525303
Length = 779
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 100 FYGDVEKPSNSRIELLESDFAVTNDSGTSRE 130
F GD+ K + +R+ L +DF++ N +GT E
Sbjct: 343 FVGDLSKVNFTRLNLRIADFSINNFTGTVPE 373
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 43 PKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKSCLTLFFDQVAKIFKH 98
P +++ KP P + T+ ++K +V+ + ++ C+TLF + + H
Sbjct: 56 PPITMASQGAAKPKLPPRSSTNARKKKRSLASVISDTDDQHCITLFVEPPLLLLDH 111
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 77 REDKEKSCLTLFFDQVAKIFKHLFYGDVEKPSNSRIELLESDFAVTNDSGTSREISNHHD 136
RED K L L+ D+ +K F+H++ V+K N + + F +T + R++ H
Sbjct: 761 REDVPK--LKLYLDKHSKEFRHIYCSAVQKVCN---PVHDETFYLTEEH--KRKLKEEHG 813
Query: 137 IFPNRF 142
I P F
Sbjct: 814 IEPWTF 819
>09_02_0578 +
10869627-10869702,10870489-10870555,10870813-10870963,
10871043-10871111,10871992-10872030,10872113-10872186,
10872281-10872347,10872902-10873075,10873169-10873852
Length = 466
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 19 YVIEDSGKVDAQ--KQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQK 69
Y +D G D Q +Q L+ ++ NE+ SQ+E+ + + +N TS + K
Sbjct: 407 YWTQDGGDADDQTVEQQPEDLKTQEQQLNEVVDSQMEEIVEIAKNVTSRGKDK 459
>06_03_1300 +
29154942-29154997,29155390-29155554,29156169-29156246,
29156353-29156632,29156809-29157258
Length = 342
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 30 QKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQ 67
++ LLRKL LQ N+ ST+Q K E ST+Q
Sbjct: 192 RQDLLRKLHALQSAANKKSTNQGAKLSESAERNLSTSQ 229
>05_05_0176 -
22968068-22968630,22968729-22968861,22968943-22969133,
22969313-22969380,22970277-22970372,22970452-22970595,
22970693-22970764,22971346-22971481,22971582-22971672
Length = 497
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 72 NETVLREDKEKSCLTLFFDQVAKIFKHLFYGDVEKPSNS 110
N VL D SC+ L D AK+ F+GD ++ S
Sbjct: 340 NPPVLLRDLSTSCIYLTEDNAAKVSDISFWGDKKEDEKS 378
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 27.5 bits (58), Expect = 9.4
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 60 ENGTSTTQQKHENETVLREDKEKSCL-TLFFDQVAKIFKHLFYGDVEKPSNSRIELL--- 115
+NG+ Q ++ +R K+K L L D++ +I L V K N+ +LL
Sbjct: 292 KNGSVIKQMSTDSCCEIRVSKDKLPLCALPRDELCQITGEL--DSVRKGLNTVAQLLFTH 349
Query: 116 ---ESDFAVTNDSGTSREISNHHDIFP 139
ESD ++SG+SR N D+ P
Sbjct: 350 PPKESDVLGAHNSGSSRSFFNQPDVLP 376
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,567,741
Number of Sequences: 37544
Number of extensions: 267309
Number of successful extensions: 727
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 13
length of query: 225
length of database: 14,793,348
effective HSP length: 79
effective length of query: 146
effective length of database: 11,827,372
effective search space: 1726796312
effective search space used: 1726796312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -