Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002206-TA|BGIBMGA002206-PA|undefined
(225 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 32 0.29
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 32 0.38
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 32 0.38
U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical pr... 31 0.67
AF125463-4|AAD12862.1| 243|Caenorhabditis elegans Hypothetical ... 31 0.67
Z74033-5|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 30 1.2
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 30 1.2
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 2.0
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.7
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 2.7
U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein. 29 2.7
AF125463-6|AAD12865.1| 301|Caenorhabditis elegans Hypothetical ... 29 2.7
U97405-11|AAB53004.1| 672|Caenorhabditis elegans Hypothetical p... 28 4.7
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr... 28 6.2
U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical p... 28 6.2
U00043-11|AAN65290.1| 641|Caenorhabditis elegans Hypothetical p... 28 6.2
U00043-10|AAC77505.1| 779|Caenorhabditis elegans Hypothetical p... 28 6.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.2
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 27 8.3
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 27 8.3
U80436-4|AAC71111.1| 552|Caenorhabditis elegans Uncoordinated p... 27 8.3
U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated p... 27 8.3
U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated p... 27 8.3
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 27 8.3
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 27 8.3
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 27 8.3
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 27 8.3
>U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical
protein C04E6.5 protein.
Length = 515
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 5 HVFIAITFMKYSKCYVIE-DSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGT 63
H ++ ++ +C VI + +++ + +K+ EP E+ S ++K + +NG
Sbjct: 353 HAILSERITRFPECLVINLERYQLEGPQFSTKKINCSLEPSFELDISSLQKFPEIEKNGL 412
Query: 64 STTQQKHENETVLREDKEKSC 84
++++ +++ D+ KSC
Sbjct: 413 EQSEKQQDSQYGQLLDRMKSC 433
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 158 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCPIGYRQDW 206
YHGR+ +K P ++TPNG N K+ +S+ P + W
Sbjct: 58 YHGRIIFPADYPMKPPNLILLTPNGRFELNKKVCLSISGYHPETWLPSW 106
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 35 RKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDK 80
RK+E ++ P +++S+ EKP +S +++HE+ET++ E++
Sbjct: 665 RKMERMRAP-TAVTSSKKEKPKNAGSADSSINEEEHEDETMILEEQ 709
>U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical
protein F18F11.3 protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.67
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 24 SGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKS 83
SGK Q +L +KL+ ++P I T I G P + + T V E+ E
Sbjct: 188 SGKCSTQLRLAKKLDFEEKP---IHTFNITAKDGDPHSNRTHTVAHTVTIHVKNENDEPP 244
Query: 84 CLTLFFDQVAKIFKHLFYGDV 104
F QV IFK GD+
Sbjct: 245 KFLTDFSQVFPIFKSTKPGDI 265
>AF125463-4|AAD12862.1| 243|Caenorhabditis elegans Hypothetical
protein Y49F6C.5 protein.
Length = 243
Score = 31.1 bits (67), Expect = 0.67
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 48 STSQIEKPIGVPENGTSTTQQKHE--NETVLR-EDKEKSCLTLFFDQVAKIFKHLFYGDV 104
+T +I K IG+P + + E ++ +L ED++ L F + FK LF+G
Sbjct: 92 ATVKITKMIGIPRKKLKSFDESVEEFSDVILAVEDEKFYVLKKFLASHSSYFKSLFFGSF 151
Query: 105 EKPSNSRIELLESDFA 120
+ S I L E + A
Sbjct: 152 AEAEKSEITLSEINSA 167
>Z74033-5|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 38 EILQEPKNEISTSQIEKPIGVPENGTSTTQQKHE----NETVLREDKEKS 83
+ ++E KN + +Q ++P +S T++ NE +LRED EK+
Sbjct: 44 KFIEENKNSMQATQSKRPPSAASGSSSRTEKSSVRPIFNEQILREDHEKA 93
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 38 EILQEPKNEISTSQIEKPIGVPENGTSTTQQKHE----NETVLREDKEKS 83
+ ++E KN + +Q ++P +S T++ NE +LRED EK+
Sbjct: 44 KFIEENKNSMQATQSKRPPSAASGSSSRTEKSSVRPIFNEQILREDHEKA 93
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 26 KVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKSCL 85
+VD +L+ K ++ K E + P+G + T E E +E KE+
Sbjct: 1208 RVDYLLKLMSKDKVKTTEKKERKRKADDVPVGPEKKKRHTNNVPQEGEKKKKEKKEEKNS 1267
Query: 86 TLFFDQVA--KIFKHLFYGDVEKPS 108
+ DQ+A I K L+ G +E S
Sbjct: 1268 SSLKDQLALLSIDKSLYGGALEDSS 1292
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 12 FMKYSKCYVIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKP 55
F+K C I + +VD L KL IL KN + E+P
Sbjct: 6161 FLKQESCQEISNEPEVDYYSDLQEKLNILAGEKNNLHALVEEEP 6204
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 12 FMKYSKCYVIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKP 55
F+K C I + +VD L KL IL KN + E+P
Sbjct: 6161 FLKQESCQEISNEPEVDYYSDLQEKLNILAGEKNNLHALVEEEP 6204
>U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein.
Length = 869
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 12 FMKYSKCYVIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKP 55
F+K C I + +VD L KL IL KN + E+P
Sbjct: 36 FLKQESCQEISNEPEVDYYSDLQEKLNILAGEKNNLHALVEEEP 79
>AF125463-6|AAD12865.1| 301|Caenorhabditis elegans Hypothetical
protein Y49F6C.3 protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 51 QIEKPIGVPENGTSTTQQKHE--NETVLRE-DKEKSCLTLFFDQVAKIFKHLFYGDVEKP 107
+I K G+P S+ +Q + ++ VL DK+ L F + FK LF G ++P
Sbjct: 122 KIRKMTGIPRKLLSSFEQSDDVFSDVVLAVYDKKFFVLKKFLATHSSYFKTLFLGKFDEP 181
Query: 108 SNSRIELLESDFA 120
+ I L + + A
Sbjct: 182 EKAEIALTDINAA 194
>U97405-11|AAB53004.1| 672|Caenorhabditis elegans Hypothetical
protein T09B4.1 protein.
Length = 672
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 21 IEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENG----TSTTQQKHENETVL 76
+ D A+K ++ +++ S+S+ + P+G E G T+ ++ E
Sbjct: 61 VTDENPFSARKSAFFTNRLIGREESDSSSSREDSPLGSTETGESCSTTDDEESKEKRIEY 120
Query: 77 REDKEKSCLTLFFDQV 92
R+ + + CL F Q+
Sbjct: 121 RDSQTQRCLGFCFRQL 136
>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
protein DH11.3 protein.
Length = 1270
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 12 FMKYSKCYVIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHE 71
+ + +K +E S K D +++ LR+ E + K + T +I +P ST Q+HE
Sbjct: 628 YARLAKSQEVEQSSKKDWEREELRRAEKM---KKKGRTVEIIEP-------NSTILQEHE 677
Query: 72 NETVLREDKEKSCLTLFFDQVAKIFKHL 99
+ V E + F ++K+F +L
Sbjct: 678 HNFVGSVITENEEQKISFSGISKLFNYL 705
>U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical
protein F41G3.2 protein.
Length = 320
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 115 LESDFAVTNDSGTSREISNHHDIFPNR-----------FDLTDPNAEVEIFEPRYHGRLK 163
LE F D+G SRE SN+ F + DPN+ EI +PR +K
Sbjct: 13 LEDQFTKNADTGNSRERSNNGGRFVKKSAAALIAKKQGMQTEDPNSATEIIDPRIAEEIK 72
Query: 164 --EETKEALK 171
+ +E LK
Sbjct: 73 NLRDREEELK 82
>U00043-11|AAN65290.1| 641|Caenorhabditis elegans Hypothetical
protein T26A5.2b protein.
Length = 641
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 21 IEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENET---VLR 77
+E + K++A ++ ++ + PK + ++EK + + T T +QK + ET + R
Sbjct: 409 VEKNVKLEAPEKQNKRKDTALNPKEKYCAQKLEKQLN---DQTKTPKQKPKQETSAGIKR 465
Query: 78 EDKEKSCL 85
E ++ C+
Sbjct: 466 ESTQRPCV 473
>U00043-10|AAC77505.1| 779|Caenorhabditis elegans Hypothetical
protein T26A5.2a protein.
Length = 779
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 21 IEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENET---VLR 77
+E + K++A ++ ++ + PK + ++EK + + T T +QK + ET + R
Sbjct: 547 VEKNVKLEAPEKQNKRKDTALNPKEKYCAQKLEKQLN---DQTKTPKQKPKQETSAGIKR 603
Query: 78 EDKEKSCL 85
E ++ C+
Sbjct: 604 ESTQRPCV 611
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 35 RKLEILQEPKNEISTSQIEKPI--GVPENGTSTTQQKHENETVLREDKE 81
++LE+ EPK T +EK + ++ S T++ E + ++++ K+
Sbjct: 10138 QQLEVKSEPKKSDKTETVEKEVASSTEKSDDSKTKEPKEKKKIIKKKKD 10186
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 35 RKLEILQEPKNEISTSQIEKPI--GVPENGTSTTQQKHENETVLREDKE 81
++LE+ EPK T +EK + ++ S T++ E + ++++ K+
Sbjct: 10158 QQLEVKSEPKKSDKTETVEKEVASSTEKSDDSKTKEPKEKKKIIKKKKD 10206
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 35 RKLEILQEPKNEISTSQIEKPI--GVPENGTSTTQQKHENETVLREDKE 81
++LE+ EPK T +EK + ++ S T++ E + ++++ K+
Sbjct: 10158 QQLEVKSEPKKSDKTETVEKEVASSTEKSDDSKTKEPKEKKKIIKKKKD 10206
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 24 SGKVDAQKQLLRKLEILQEPKNEI 47
SGK++A KQLL + EI + P E+
Sbjct: 1284 SGKMEALKQLLIECEICKNPDEEV 1307
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 24 SGKVDAQKQLLRKLEILQEPKNEI 47
SGK++A KQLL + EI + P E+
Sbjct: 1284 SGKMEALKQLLIECEICKNPDEEV 1307
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 102 GDVEKPSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRF 142
G+V+KP + RI L E + + +E N IF ++F
Sbjct: 2020 GNVQKPKDRRIFLFEQSAIIADHIPPKKEFGNPTYIFKSQF 2060
>U80436-4|AAC71111.1| 552|Caenorhabditis elegans Uncoordinated
protein 73, isoform d protein.
Length = 552
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 102 GDVEKPSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRF 142
G+V+KP + RI L E + + +E N IF ++F
Sbjct: 374 GNVQKPKDRRIFLFEQSAIIADHIPPKKEFGNPTYIFKSQF 414
>U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated
protein 73, isoform e protein.
Length = 633
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 102 GDVEKPSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRF 142
G+V+KP + RI L E + + +E N IF ++F
Sbjct: 455 GNVQKPKDRRIFLFEQSAIIADHIPPKKEFGNPTYIFKSQF 495
>U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated
protein 73, isoform c protein.
Length = 928
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 102 GDVEKPSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRF 142
G+V+KP + RI L E + + +E N IF ++F
Sbjct: 460 GNVQKPKDRRIFLFEQSAIIADHIPPKKEFGNPTYIFKSQF 500
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 102 GDVEKPSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRF 142
G+V+KP + RI L E + + +E N IF ++F
Sbjct: 2020 GNVQKPKDRRIFLFEQSAIIADHIPPKKEFGNPTYIFKSQF 2060
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 27.5 bits (58), Expect = 8.3
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 21 IEDSGKVDAQK--QLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHE-NE-TVL 76
++D+ KV +LL+ + ++E KN+ T +E V G Q +H+ NE +
Sbjct: 2125 LKDAAKVMVSNVARLLKTVATVEE-KNQQGTRAVEA--AVDAIGFEMKQFEHDLNEGAAI 2181
Query: 77 REDKEKSCLTLFFDQVAKIFKHLFYG-DVEKPSNSRIELLE-SDFAVTNDSGTSREISNH 134
D L + V++I K + G D + I + S AV + R ISN
Sbjct: 2182 PTDFRPEHLQQTAEHVSEITKRVMQGADAPQSEEEIIGVANLSRSAVRSLLAVVRTISND 2241
Query: 135 HDIFPNRFDLTDPNAEV 151
D P R+ + D +V
Sbjct: 2242 ADTAPQRYAVLDSGRDV 2258
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
exchange factorUNC-73A protein.
Length = 2488
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 102 GDVEKPSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRF 142
G+V+KP + RI L E + + +E N IF ++F
Sbjct: 2020 GNVQKPKDRRIFLFEQSAIIADHIPPKKEFGNPTYIFKSQF 2060
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 27.5 bits (58), Expect = 8.3
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 21 IEDSGKVDAQK--QLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHE-NE-TVL 76
++D+ KV +LL+ + ++E KN+ T +E V G Q +H+ NE +
Sbjct: 2125 LKDAAKVMVSNVARLLKTVATVEE-KNQQGTRAVEA--AVDAIGFEMKQFEHDLNEGAAI 2181
Query: 77 REDKEKSCLTLFFDQVAKIFKHLFYG-DVEKPSNSRIELLE-SDFAVTNDSGTSREISNH 134
D L + V++I K + G D + I + S AV + R ISN
Sbjct: 2182 PTDFRPEHLQQTAEHVSEITKRVMQGADAPQSEEEIIGVANLSRSAVRSLLAVVRTISND 2241
Query: 135 HDIFPNRFDLTDPNAEV 151
D P R+ + D +V
Sbjct: 2242 ADTAPQRYAVLDSGRDV 2258
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,136,274
Number of Sequences: 27539
Number of extensions: 274725
Number of successful extensions: 941
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 37
length of query: 225
length of database: 12,573,161
effective HSP length: 79
effective length of query: 146
effective length of database: 10,397,580
effective search space: 1518046680
effective search space used: 1518046680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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