GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002205-TA|BGIBMGA002205-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   1.6  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   2.9  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    25   2.9  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   3.8  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   6.6  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    24   6.6  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    24   8.7  

>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 100 YLEGKDCRKSTLNFFMSMLQYAEWIKAVTG 129
           Y+  +DCR+  LN F   L  AE +   +G
Sbjct: 427 YMGAEDCRRQALNVFRIRLLGAEVVPVTSG 456


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 36  IALNDVALLKLKKPLIFNE--RIKALDLPVGTNFKGQRHELVGRVTDAGEPG-SPLVQNN 92
           I   D +L++L + LIFNE  RI+ L LP   ++    +E V  + D  E   +  V+N+
Sbjct: 434 IVSTDASLVELIEVLIFNEELRIQTL-LPTMLSYMVNNYESVLLMEDVYETYLAEQVEND 492

Query: 93  TLTGIASYLEGKDCR 107
            L  +   LE  D R
Sbjct: 493 RLLRLLLKLEFLDDR 507


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 2   YSVWVGGENNSTSHMREISEIYFHPNYVTFTEDEIALNDV 41
           Y VW+G    +   ++ I     +P +  F+ D IA+ D+
Sbjct: 153 YDVWLGNLRGNKYSIKNIKFSSQNPKFWDFSLDSIAIFDI 192


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 64  GTNFKGQRHELVGRVTDAGEPGSPLVQNNTLTGIASYLEGKD 105
           G +  G + ELV R+T A E       NN  T +      +D
Sbjct: 20  GLSTAGNKAELVSRLTAATESNDENTSNNNATDLGDLAPPED 61


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 9   ENNSTSHMREISEIYFHPNYVTFTEDEIA 37
           EN +   MR +  +Y+ P  V    +E+A
Sbjct: 504 ENTARLIMRRLDRVYYKPEQVIRANEEVA 532


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 31  FTEDEIALNDVALLKLKKPLIFNERIKAL 59
           + ++EI +  VAL + KK LI N+ I  L
Sbjct: 752 YLQEEINILYVALTRAKKRLILNDTITKL 780


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 26 PNYVTFTEDEIALNDVA 42
          P+YV FTEDE  + + A
Sbjct: 70 PSYVAFTEDERLVGEAA 86


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,607
Number of Sequences: 5004
Number of extensions: 25440
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 7
length of query: 130
length of database: 2,362,478
effective HSP length: 66
effective length of query: 64
effective length of database: 2,032,214
effective search space: 130061696
effective search space used: 130061696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)