GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002205-TA|BGIBMGA002205-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
         (130 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0187 - 13919143-13919901                                         32   0.17 
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571           30   0.69 
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    29   1.6  
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507...    28   2.1  
07_03_0427 - 18080959-18081079,18081203-18081410,18081608-18081710     27   4.8  
03_05_1022 - 29756127-29756198,29756335-29756421,29756783-297569...    27   4.8  

>10_07_0187 - 13919143-13919901
          Length = 252

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 72  HELVGRVTDAGEPGSPLVQNNTLTGIASYLEGKDCRK 108
           HE+V R +  G  G P+  ++ L G+   L+G+D R+
Sbjct: 203 HEMVARASAGGGFGGPVKPSSMLEGVGRTLKGRDLRR 239


>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
          Length = 527

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 5   WVGGENNSTSHMREISEIYFHPNYVTF--TEDEIALNDVALLKLKKPLIFNERIKALD 60
           ++ G+     +      +Y HP   +   TE+++  + VA    K PL+ N R KA+D
Sbjct: 395 FIAGKEGHVDYDTVPGVVYTHPEVASVGKTEEQVKASGVAYQVGKFPLLANSRAKAID 452


>01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,
            8696199-8696258,8696336-8696414,8696494-8696555,
            8697129-8697204,8697367-8697419,8698181-8698270,
            8698411-8698458
          Length = 1346

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 12   STSHMREISEIYFHPNYVTFTEDEIALNDVALLKLKKPLIFNERIKALDL 61
            + S + +IS+ YF P Y +F EDE  +  +   KL   L+ ++ +K  D+
Sbjct: 1051 TVSDLEKISQKYFLPMYPSFAEDEDPI-PIYAQKLLVMLMEHDYVKVSDI 1099


>03_05_1021 -
           29750155-29750220,29750342-29750428,29750614-29750799,
           29750965-29751059,29751179-29751284,29751378-29751452,
           29751548-29751679,29751782-29751961,29752371-29752567,
           29752651-29752906
          Length = 459

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 6   VGGENNS-TSHMREISEIYFHPNYVTFTEDEIALNDVALLKL 46
           VGG N+S TSH++EI E+   P+Y   +E  I   +    KL
Sbjct: 367 VGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKL 408


>07_03_0427 - 18080959-18081079,18081203-18081410,18081608-18081710
          Length = 143

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 74  LVGRVTDAGEPGSPLVQNNTLTGIASYLEGK-DCRK 108
           LV R+   G PG P+++ N L    S +E K  CRK
Sbjct: 69  LVLRLRGGGRPGYPMIEPNLLALARSKMEKKMICRK 104


>03_05_1022 -
           29756127-29756198,29756335-29756421,29756783-29756968,
           29757088-29757188,29757379-29757484,29757564-29757638,
           29757772-29757903,29771476-29771655,29772032-29772234,
           29773296-29773602
          Length = 482

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 6   VGGENNS-TSHMREISEIYFHPNYVTFTEDEI 36
           VGG N+S TSH++EI E+   P+Y    E  I
Sbjct: 388 VGGWNSSNTSHLQEIGELSGIPSYWVDGEQRI 419


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,871,023
Number of Sequences: 37544
Number of extensions: 146633
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 14,793,348
effective HSP length: 74
effective length of query: 56
effective length of database: 12,015,092
effective search space: 672845152
effective search space used: 672845152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)