GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002205-TA|BGIBMGA002205-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
         (130 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    41   5e-06
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   4.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 40.7 bits (91), Expect = 5e-06
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 5   WVGGENNSTSHMREISEIYFHPNYVTFTEDEIALNDVALLKLKKPLIFNERIKALDLP 62
           W      + + +  I+++  HP Y    +D+  +ND+ALLK +K + F +++    LP
Sbjct: 222 WSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLP 279


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 64  GTNFKGQRHELVGRVTDAGE 83
           G +FK  +HE V R + AG+
Sbjct: 709 GDSFKVSKHEEVSRTSTAGQ 728


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 2  YSVWVGGENNSTSHMREISEIYFHPNYV 29
          ++ +  G N +   +REI+EIY   N V
Sbjct: 70 FNAYDDGGNFNEVVVREIAEIYLDENEV 97


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   YSVWVGG 8
           YSVW+GG
Sbjct: 112 YSVWIGG 118


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 4   VWVGGENNSTSHM 16
           VWVGGE+ + + +
Sbjct: 227 VWVGGESEALARL 239


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,222
Number of Sequences: 429
Number of extensions: 1637
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 130
length of database: 140,377
effective HSP length: 51
effective length of query: 79
effective length of database: 118,498
effective search space:  9361342
effective search space used:  9361342
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)