GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002204-TA|BGIBMGA002204-PA|undefined
         (100 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    24   0.35 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   5.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    19   9.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    19   9.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    19   9.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           19   9.9  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.8 bits (49), Expect = 0.35
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 30  EKETTYRRYESYLLFIITCILAAILYLLWKRC 61
           E  T Y   E Y       +   I Y LWK C
Sbjct: 211 ENATLYSGDEMYFRVAFPSVFTLIDYSLWKAC 242


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 41  YLLFIITCILAAILYLL 57
           +L FII  I+  ILY +
Sbjct: 243 FLFFIIPLIILLILYCI 259


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 59  KRCKMNYGRYMRRELQE 75
           KR +  Y RY   EL++
Sbjct: 184 KRTRQTYTRYQTLELEK 200


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 59  KRCKMNYGRYMRRELQE 75
           KR +  Y RY   EL++
Sbjct: 184 KRTRQTYTRYQTLELEK 200


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 38  YESYLLFIITCILAAILYLLWKRCK 62
           ++ Y  FI+  ++ A+L +L ++ K
Sbjct: 149 FQFYAQFIVYFLIYAVLEMLLQKYK 173


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 59  KRCKMNYGRYMRRELQE 75
           KR +  Y RY   EL++
Sbjct: 184 KRTRQTYTRYQTLELEK 200


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578
Number of Sequences: 317
Number of extensions: 583
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 100
length of database: 114,650
effective HSP length: 48
effective length of query: 52
effective length of database: 99,434
effective search space:  5170568
effective search space used:  5170568
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.4 bits)
S2: 37 (19.0 bits)