GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002204-TA|BGIBMGA002204-PA|undefined
         (100 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   2.2  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    24   3.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    24   5.1  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   5.1  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    23   6.7  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    23   8.9  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    23   8.9  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 43  LFIITCILAAILYLLWKRCKMNYGRYMR 70
           + + TCI+ +I+ + ++ C  NY  + R
Sbjct: 530 ILVTTCIMVSIITVYFQLCSENYNWWWR 557


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 59  KRCKMNYGRYMRRELQEFPMVGT 81
           KRC  N+G +++  L    MVGT
Sbjct: 222 KRCLENFGPFVKLSLLGIVMVGT 244


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 40  SYLLFIITCILAAILYLLWKRCKMNYGRYMRRE 72
           S L+ I    L + +Y +WK C++ +  ++  E
Sbjct: 289 SLLIIIAGLFLISSIYEIWKWCRIRHKAFLLDE 321


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 33  TTYRRYESYLLFIITCILAAILYLLWKRCK 62
           T YRR   Y +  I+CI+  I+Y L  + K
Sbjct: 117 TIYRR--PYTMSCISCIIGHIMYALADKAK 144


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 45  IITCILAAILYLLWK 59
           I+TC++A +L +LW+
Sbjct: 91  ILTCLVAILLSVLWR 105


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 583

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 39 ESYLLFIITCILAAILYLLW 58
          +SY LFII  +   + YL W
Sbjct: 52 DSYDLFIINLVSPILAYLYW 71


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 41  YLLFIITCILAAIL 54
           Y+LF I C+LAA L
Sbjct: 134 YVLFAIVCLLAAAL 147


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,568
Number of Sequences: 5004
Number of extensions: 10262
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 7
length of query: 100
length of database: 2,362,478
effective HSP length: 63
effective length of query: 37
effective length of database: 2,047,226
effective search space: 75747362
effective search space used: 75747362
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 47 (23.0 bits)