GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002204-TA|BGIBMGA002204-PA|undefined
         (100 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1228 - 35541160-35541729                                         29   0.83 
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202...    26   4.4  
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643...    26   5.8  
03_02_0207 - 6411324-6412895                                           26   5.8  
03_01_0193 + 1541884-1543064,1543153-1544647                           26   5.8  
12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           25   7.7  

>01_06_1228 - 35541160-35541729
          Length = 189

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 42 LLFIITCILAAILYLLWKRCKMNYGR 67
          LLF++ C +A  LYL W      YGR
Sbjct: 39 LLFVLVCFVAVSLYLRWACHCHRYGR 64


>11_04_0094 +
           13418604-13418680,13419331-13419400,13420078-13420236,
           13420334-13420445,13420530-13420649,13422249-13422406,
           13422987-13423217,13424621-13424713,13425088-13425227,
           13426331-13426401,13427554-13427637,13427752-13427846
          Length = 469

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 42  LLFIITCILAAILYLLWKRCKM----NYGRYMRRELQEFP 77
           LL+++ C L  I+ L W R ++    NYGR     L + P
Sbjct: 430 LLYLVPCTLGLIVILGWFRGELHDLWNYGRSQTENLVDEP 469


>05_04_0366 -
           20663243-20663388,20663467-20663572,20664275-20664367,
           20664520-20664657,20664759-20664886,20664996-20665156,
           20665277-20665367,20665460-20665516,20666288-20666444
          Length = 358

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 26  TFDDEKETTYRRYESYLLFIITCILAAILYL 56
           TF    +  Y +   +LLF++ CI+  + YL
Sbjct: 212 TFSGMNQLVYPQMWVFLLFVVACIVTQMNYL 242


>03_02_0207 - 6411324-6412895
          Length = 523

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 42 LLFIITCILAAILYLLWKRCKMNY--GRYMRRELQEFPMVG 80
          LL ++  +  A++   W   + ++   RY   EL+ +P+VG
Sbjct: 6  LLLLVFLVSVALVVRTWSASRRSHEKARYATAELRPYPLVG 46


>03_01_0193 + 1541884-1543064,1543153-1544647
          Length = 891

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 36  RRYESYLLFIITCILAAILYLLWKR--CKMNYGRYMRRELQE 75
           RR +   + +I  I+AA L L+     C MN   YMRR  +E
Sbjct: 510 RRAKQLAVSVIIVIVAAALILIGVCIVCAMNIKAYMRRSKEE 551


>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 28  DDEKETTYRRYESYLLFIITCILAAILYLLWKRCKM--NYGRYMRRELQEFP 77
           D  K ++ R   SY+  +    +A   Y  W+RC    N+GR     L   P
Sbjct: 345 DASKFSSLRELASYVKAVANDPVAYAEYHAWRRCGTLGNFGRSREMSLDTLP 396


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,504
Number of Sequences: 37544
Number of extensions: 56576
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 6
length of query: 100
length of database: 14,793,348
effective HSP length: 71
effective length of query: 29
effective length of database: 12,127,724
effective search space: 351703996
effective search space used: 351703996
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)