GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002204-TA|BGIBMGA002204-PA|undefined
         (100 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical p...    28   0.99 
AC006733-7|AAF60484.1|  279|Caenorhabditis elegans Hypothetical ...    28   1.3  
L16559-1|AAA27934.2|  397|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z49130-9|CAA88972.2|  316|Caenorhabditis elegans Hypothetical pr...    26   4.0  
Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical pr...    26   5.3  
AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical ...    25   9.3  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    25   9.3  

>Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical
          protein F56H6.13 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 42 LLFIITCILAAILYLLWKRCKMNY 65
          L FII+CIL  ++Y  WK  K NY
Sbjct: 11 LAFIISCILGLLVY--WKMFKNNY 32


>AC006733-7|AAF60484.1|  279|Caenorhabditis elegans Hypothetical
          protein Y32H12A.6 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/35 (25%), Positives = 21/35 (60%)

Query: 41 YLLFIITCILAAILYLLWKRCKMNYGRYMRRELQE 75
          Y+   +  ++   +YLL+++C   Y RY +++ +E
Sbjct: 37 YITAALGVLMPGFVYLLYRKCHAYYERYSKKKEEE 71


>L16559-1|AAA27934.2|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.3 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 35  YRRYESYLLFIITCILAAILYLLWKRCKM 63
           +  Y+S L   I+C++A ++YLL   C++
Sbjct: 212 HNAYKSILATGISCLIACLVYLLLSPCEL 240


>Z49130-9|CAA88972.2|  316|Caenorhabditis elegans Hypothetical
           protein T06D8.9 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 31  KETTYRRYESYLLFIITCILAAILYLLWKRCKMN 64
           ++++  R++ +  F++   +A I+Y +W     N
Sbjct: 142 RKSSQDRWDQFATFVVVAFIAYIIYAMWTNRNQN 175


>Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical
          protein C41C4.3 protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 26 TFDDEKETTYRRYESYLLFIITCILAAILYLLWKRCKMNYGRY 68
          TF +  ET + +++ Y   +I+C+LA    +    C   YGRY
Sbjct: 6  TFFESLET-HMKFQIYFFLLISCVLAKKPVIF---CDDAYGRY 44


>AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical
           protein Y6B3B.10 protein.
          Length = 360

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 30  EKETTYRRYESYLL-----FIITCILAAILYLLWKRCKMNY 65
           +K T  + Y+ Y L     FI+  I+  I  L W  CK+ Y
Sbjct: 234 KKRTNRQYYKYYFLMGNAAFILFAIIWVIFRLYWYTCKLLY 274


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 41  YLLFIITCILAAILYLLWKRCKMNYGRYMR 70
           YL+ IITC  A IL   +  C  +Y  + R
Sbjct: 554 YLILIITCSEATILLAYFHLCAEDYHWWWR 583


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,637
Number of Sequences: 27539
Number of extensions: 56195
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 7
length of query: 100
length of database: 12,573,161
effective HSP length: 70
effective length of query: 30
effective length of database: 10,645,431
effective search space: 319362930
effective search space used: 319362930
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)