GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002204-TA|BGIBMGA002204-PA|undefined
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   5.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   8.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   8.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   8.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 33  TTYRRYESYLLFIITCILAAILY 55
           T +  Y S   F I CI+   LY
Sbjct: 341 TDFIIYSSLSSFYIPCIIMVFLY 363


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
          channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 40 SYLLFIITCILAAILYLL 57
          S L+F I CIL   L L+
Sbjct: 29 SSLIFTILCILTLALTLV 46


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
          channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 40 SYLLFIITCILAAILYLL 57
          S L+F I CIL   L L+
Sbjct: 29 SSLIFTILCILTLALTLV 46


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
          channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 40 SYLLFIITCILAAILYLL 57
          S L+F I CIL   L L+
Sbjct: 29 SSLIFTILCILTLALTLV 46


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
          channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 40 SYLLFIITCILAAILYLL 57
          S L+F I CIL   L L+
Sbjct: 29 SSLIFTILCILTLALTLV 46


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,320
Number of Sequences: 429
Number of extensions: 1012
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.8 bits)
S2: 38 (19.4 bits)