Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002203-TA|BGIBMGA002203-PA|IPR002078|Sigma-54 factor,
interaction region, IPR003577|Ras small GTPase, Ras type,
IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small GTPase, Rho
type, IPR005225|Small GTP-binding protein domain, IPR013753|Ras
(167 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 122 4e-29
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 118 6e-28
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 114 7e-27
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 104 8e-24
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 99 2e-22
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 98 5e-22
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 94 1e-20
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 93 1e-20
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 77 1e-15
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 76 2e-15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 73 3e-14
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 71 9e-14
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 71 9e-14
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 69 3e-13
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 63 2e-11
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 62 3e-11
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 62 4e-11
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 54 1e-08
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 50 1e-07
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 47 2e-06
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 45 5e-06
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 39 4e-04
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 37 0.002
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.022
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 33 0.022
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 31 0.12
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 27 1.1
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 1.1
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 1.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 1.9
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 1.9
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 5.8
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 5.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 122 bits (293), Expect = 4e-29
Identities = 59/146 (40%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
K+LL+G+SGVGKS ++L F Y + +TIGVD+ + ++ G VKL IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNK---IDK 128
+RT+T+S+YR AHG I+VYDV++ + + +W++E+ Y + + L+VGNK +DK
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAV-EGVNRLLVGNKSDMVDK 128
Query: 129 IIETPGLWEKDTSASNIRVTEEEARE 154
+ + ++ + NI E A++
Sbjct: 129 KVVEYSVAKEFADSLNIPFLETSAKD 154
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 118 bits (283), Expect = 6e-28
Identities = 48/117 (41%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQE 70
+K+LL+G+SGVGKS ++L F++ + F TIG+D+ + ++++G ++KL IWDTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
R+RT+TT++YR A G +L+YDV++ K+ + W ++ + ++N+ +++GNK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQH-ASENVYKILIGNKCD 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 114 bits (274), Expect = 7e-27
Identities = 48/116 (41%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
K +L+G+SGVGKS++++ FT+ ++ + +TIGV++ + + ++ K+K IWDTAGQER
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
YR +T+++YR A GA++VYD+++ + + W++EL+ + + NIV ++VGNK D
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREH-ADSNIVIMLVGNKTD 126
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 104 bits (249), Expect = 8e-24
Identities = 53/132 (40%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVN-GLKVKLGIWDTAGQE 70
K++LLG+S VGKSS++L F K + +TIG + + + ++ VKL IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKIDKII 130
RY++L +YR A+ AI+VYD+++ +L K W++ELQ + IV + GNK+D
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQ-RQAPEGIVIALAGNKLDLAQ 134
Query: 131 ETPGLWEKDTSA 142
E + + D A
Sbjct: 135 ERRAVEKADAEA 146
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 99 bits (238), Expect = 2e-22
Identities = 48/149 (32%), Positives = 85/149 (57%), Gaps = 2/149 (1%)
Query: 10 KLKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQ 69
K K++ LGE VGK+S+I F + + ATIG+D+ K M + V+L +WDTAGQ
Sbjct: 11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 70 ERYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKIDKI 129
ER+R+L S+ R++ AI+VYD++ + +W+E+++ +++ ++VGNK D
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRA-ERGDDVIIVLVGNKTDLA 129
Query: 130 IETPGLWEK-DTSASNIRVTEEEAREQGG 157
+ E+ + A +++ E + G
Sbjct: 130 DKRQVTQEEGEKKAKELKIMHMETSAKAG 158
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 98.3 bits (234), Expect = 5e-22
Identities = 48/120 (40%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQE 70
LK+++LGESGVGK+SI+ + + + ATIG D+ K + V+ V L +WDTAGQE
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKN---IVCLVVGNKID 127
R+++L +FYR A +LVYDV+ K+ L+ W +E + + N +++GNK+D
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVD 128
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 93.9 bits (223), Expect = 1e-20
Identities = 46/121 (38%), Positives = 78/121 (64%), Gaps = 4/121 (3%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQE 70
LK+++LG+SGVGK+ ++ F + ++ ATIG D+ K + V+ V L +WDTAGQE
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKN---IVCLVVGNKID 127
R+++L +FYR A ++VY+V+ K+ + W +E +Y T+++ ++VGN+ID
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEF-LYQTSQDECAFPFIIVGNQID 127
Query: 128 K 128
K
Sbjct: 128 K 128
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 93.5 bits (222), Expect = 1e-20
Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVN----GLKVKLGIWDT 66
+KI+L G SG GKS ++ F K + Q T+G+D+ +I+ V ++KL IWDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 67 AGQERYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKI 126
AGQE++R++ ++YR A GA+LVYDV+ + +L+ W+ +++ + I ++ G+K
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS-TICVVLAGSKS 128
Query: 127 D 127
D
Sbjct: 129 D 129
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 77.0 bits (181), Expect = 1e-15
Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
K++++G+ GK+ +++ F+KG + + T+ +Y + +V+G ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADV-EVDGRHIELALWDTAGQED 66
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAKLNE-WVEELQVYTTNKNIVCLVVGNKIDKII 130
Y L Y ++H ++ + V P++L + E W+ E+ + +N I L+VG K+D +
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPI--LLVGCKVD-LR 123
Query: 131 ETPGLWEKDTSASNIRVTEEEAR 153
P E+ + S +T EE +
Sbjct: 124 NDPKTIEELSKTSQKPITFEEGQ 146
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 76.2 bits (179), Expect = 2e-15
Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQE 70
+K+ ++G+S +GK+S+++ + +G + + T+GV++ K + + ++ IWD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKIDKII 130
+ + +A + ++D+S TL + EW + + + NK V +++G K D +
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGF--NKTAVPILIGTKYDHFM 128
Query: 131 ETP 133
P
Sbjct: 129 TFP 131
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 72.5 bits (170), Expect = 3e-14
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
K++++G+ GK+S++ FT G + ++ T+ +Y V+G V+L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCR-VDGKSVQLALWDTAGQEE 68
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAKLN-EWVEELQVYTTNKNIVCLVVGNKID 127
Y L Y +AH ++ + + P +L ++ +W+EE+ T N+ ++VG K D
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEIN--TLCPNVPFILVGMKAD 123
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 70.9 bits (166), Expect = 9e-14
Identities = 41/143 (28%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
K++++G+ GK+ +++ F+KG + + T+ +Y + +V+G V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADV-EVDGRHVELALWDTAGQED 66
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAKLNE-WVEELQVYTTNKNIVCLVVGNKIDKII 130
Y L Y ++H ++ + V P +L + E W+ E+ + ++ I L+V K D +
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPI--LLVACKAD-LR 123
Query: 131 ETPGLWEKDTSASNIRVTEEEAR 153
P + E+ + + VT EE +
Sbjct: 124 NDPKIIEELSKTNQHPVTTEEGQ 146
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 70.9 bits (166), Expect = 9e-14
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 8 VAKLKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTA 67
V K++L+G+ G GK++ + G+++ ++ AT+GV+ + N ++ +WDTA
Sbjct: 7 VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTA 66
Query: 68 GQERYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
GQE+ L +Y + I+++DV+ T + W +L +NI ++ GNK+D
Sbjct: 67 GQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL--VRVCENIPIVLCGNKVD 124
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 69.3 bits (162), Expect = 3e-13
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
KI++LG+ GK+S++ FTKG + + TI +Y H I V+G ++L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIF-VDGNSIELSLWDTAGQEE 73
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAK-LNEWVEEL 108
Y L + Y + H ++ + V +L + +W+ E+
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEV 111
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 62.9 bits (146), Expect = 2e-11
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIM-DVNGLKVKLGIWDTAGQE 70
K++++G+ G GK+ +++ F+ G + ++ T+ +Y I N ++L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNE-WVEELQVYTTNKNIVCLVVGNKID 127
Y L Y ++ +L + + P +L + E W E+Q + IV +VG K D
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIV--LVGLKAD 131
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 62.5 bits (145), Expect = 3e-11
Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQE 70
+K +++G+ VGK+ +++++T + + + T+ +Y +M + LG++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVM-IGDEPYTLGLFDTAGQE 62
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNE-WVEELQVYTTNKNIVCLVVGNKIDKI 129
Y L Y + ++ + V+ P + + E W E V+ + CL+VG +ID +
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPE--VHHHCPGVPCLIVGTQID-L 119
Query: 130 IETPGLWEKDTSASNIRVTEEE----AREQGGSCYETTCS 165
+ P + +K +T E+ ARE G Y CS
Sbjct: 120 RDDPSVQQKLARQHQHPLTHEQGERLARELGAVKY-VECS 158
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 62.1 bits (144), Expect = 4e-11
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
K++++G+ GVGKS++ + + + ++ TI Y K +++G L + DTAGQE
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQEE 68
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
Y + + R G +LVY+++ + +++ + +++ ++V NK D
Sbjct: 69 YSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCD 124
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 54.0 bits (124), Expect = 1e-08
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQER 71
+I +LG VGKSS+ + + + + + TI ++ I G + I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIK-YKGQEFATEIIDTAGQDE 66
Query: 72 YRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
Y L + HG +LVY ++ + + +++ +T + + +VVGNK D
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSD 122
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 50.4 bits (115), Expect = 1e-07
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 10 KLKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQ 69
+++IL++G GK++I+ G+ P TIG + + V + +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VETVEYRNISFTVWDVGGQ 71
Query: 70 ERYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
++ R L +++ G I V D ++ + +++ +E ++ + ++ + LV NK D
Sbjct: 72 DKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQD 129
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 46.8 bits (106), Expect = 2e-06
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 10 KLKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQ 69
+++IL+LG GK++I+ P T+G + + V +K +WD GQ
Sbjct: 21 EMRILMLGLDAAGKTTILYKLKLNQSVVTIP-TVGFN----VETVTYKNIKFNVWDVGGQ 75
Query: 70 ERYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
++ R L ++ G I V D ++ +++ + + + ++ + LV+ NK D
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQD 133
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 45.2 bits (102), Expect = 5e-06
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 10 KLKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQ 69
++++LLLG GK++I+ D P T G + + ++V GL+ IWD GQ
Sbjct: 16 EVRVLLLGLDNAGKTTILKCLLNEDVNEVSP-TFG--FQIRTLEVEGLRFT--IWDIGGQ 70
Query: 70 ERYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
+ R +++ I V D + L + ++EL V LV+ NK D
Sbjct: 71 KTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSD 128
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 38.7 bits (86), Expect = 4e-04
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIG--VDYNHKIMDVNGLKVKLGIWDTAGQ 69
K+LL+G SG GKSS + + +Y A+ +G +D H + G + L +WD GQ
Sbjct: 4 KVLLMGRSGSGKSS-MRSIVFSNYVAKDTRRLGATIDIEHSHVRFLG-NLVLNLWDCGGQ 61
Query: 70 ERYRTLTTS-----FYREAHGAILVYDVSE---PKTLAKLNEWVEELQVYTTNKNIVCLV 121
E + S +R I V+DV + L +E + + CL+
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLI 121
Query: 122 VGNKIDKIIE 131
+K+D + E
Sbjct: 122 --HKMDLVQE 129
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 36.7 bits (81), Expect = 0.002
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 12 KILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGL-KVKLGIWDTAGQE 70
K+L LG GK+++ L K D A T+ H + + V+ +D G +
Sbjct: 22 KMLFLGLDNAGKTTL-LHMLKNDRLAVMQPTL-----HPTSEELAIGNVRFTTFDLGGHQ 75
Query: 71 RYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKID 127
+ R L ++ E +G + + D + + L++ ++ L + L++GNKID
Sbjct: 76 QARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKID 132
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 33.1 bits (72), Expect = 0.022
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 10 KLKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQ 69
++++++ G+ GVGKSS+I A + D P + D N V L + DT
Sbjct: 3 EVRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSNPDSND-DVSLVLVDTQSD 61
Query: 70 ERYRTLTTSFYREAHGAILVY 90
R + ++A+ LVY
Sbjct: 62 SNEREYLAAEIKKANVICLVY 82
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 33.1 bits (72), Expect = 0.022
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 13 ILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQERY 72
+L G G GK+S ILA + Y G +Y +++M++N + GI D ++
Sbjct: 59 MLFYGPPGTGKTSTILACARKIY--------GPNYRNQLMELNASDDR-GI-DAVREQIK 108
Query: 73 RTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKIDKI 129
+T + +++ D ++ TLA N ++ YT KN+ ++ N I+KI
Sbjct: 109 NFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKYT--KNVRFCIICNYINKI 163
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 30.7 bits (66), Expect = 0.12
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 85 GAILVY-DVSEPKTLAKLNEWVEELQVYTTNKNIVCLVVGNKI-DKIIETPGLWEKDTSA 142
G + +Y D+ +P TL KL E + L TN +I C VV I D + + G+ +D +
Sbjct: 89 GVLPIYGDIRDPNTLTKLFEALRLLHEPNTNDSIDCRVVDAVISDMLHKATGIRIRDHAL 148
Query: 143 S 143
S
Sbjct: 149 S 149
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 77 TSFYREAHGAILVYDVSEPKTLAKLN 102
T YR+AHG +VYD + T A+ N
Sbjct: 52 TKAYRKAHGKEMVYDTALAVTAARRN 77
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.5 bits (58), Expect = 1.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 13 ILLLGESGVGKSSIILAFTKGDY----QAQFPATIGVD------YNHKIMDV--NGLKVK 60
+L+LGESG GKS+++ D Q GV+ N +++ NG+ ++
Sbjct: 98 VLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDFGVNPEPTVMINSSAVEIVENGISLQ 157
Query: 61 LGIWDTAG 68
L + DT G
Sbjct: 158 LNVIDTPG 165
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 37 AQFPATIGVDYNHKIMDVNGLKVKLGIWDTAGQERYRTL 75
AQ P + +D K V+G K + ++DTA E TL
Sbjct: 410 AQEPDPMSIDMTDKSETVSGFKHDVDVYDTAENEGNNTL 448
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 60 KLGIWDTAGQERYRTLTTSFYREAHGAILVYDVSEPKTLAKLNEWVEELQVYTTNKNIV 118
K+ + D A + L T +R A L EP + KL +W +E +V+T +V
Sbjct: 268 KIPVQDYASGKISSPLITRTHRRAQSETLFSSCREPWLVGKLYKWCKE-EVFTALGGLV 325
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 1.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPAT-IGVDYNHKIMDVNGLKVKLGIWDTAG 68
+ + +LG S GKSS+I P + D ++D+NG V L DTAG
Sbjct: 240 INVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLS--DTAG 296
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 5 MDCVAKLKILLLGESGVGKSSI 26
MD V + ++L G+ GVGKSS+
Sbjct: 1 MDKVQHVILVLSGKGGVGKSSV 22
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 5.8
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 11 LKILLLGESGVGKSSIILAFTKGDYQAQFPATIGVDY-NHKIMDVNG-LKVKLGIWDTAG 68
+ ++++GES +GK++ + +F + + F +D+ HK +G K L I DT G
Sbjct: 119 INLIVVGESSLGKTTFVNSFLQSN-DTNFRPKKTMDFVEHKATLSDGDQKFNLTIVDTPG 177
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 13 ILLLGESGVGKSSIILAFTK 32
ILL G GVGK+S+I A +
Sbjct: 1562 ILLEGSPGVGKTSLITALAR 1581
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,954
Number of Sequences: 5004
Number of extensions: 28809
Number of successful extensions: 153
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 37
length of query: 167
length of database: 2,362,478
effective HSP length: 68
effective length of query: 99
effective length of database: 2,022,206
effective search space: 200198394
effective search space used: 200198394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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