GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002203-TA|BGIBMGA002203-PA|IPR002078|Sigma-54 factor,
interaction region, IPR003577|Ras small GTPase, Ras type,
IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small GTPase, Rho
type, IPR005225|Small GTP-binding protein domain, IPR013753|Ras
         (167 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   3.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.3  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
          protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 23 KSSIILAFTKGDYQAQFPATIGVDYNHKIMDVNGL 57
          + SI++  TK   + +   ++ +DY  ++ D NG+
Sbjct: 39 RGSIVIQGTK---EGKSRPSLDIDYKQRVYDKNGM 70


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 12  KILLLGESGVGKSSIIL 28
           K+LLL   G GKS+I +
Sbjct: 136 KVLLLPVRGAGKSNITM 152


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,478
Number of Sequences: 429
Number of extensions: 1891
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 167
length of database: 140,377
effective HSP length: 53
effective length of query: 114
effective length of database: 117,640
effective search space: 13410960
effective search space used: 13410960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)