GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002202-TA|BGIBMGA002202-PA|IPR008906|HAT dimerisation
         (474 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    24   2.0  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    24   2.0  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    24   2.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.7  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 298 SKAGHVVADRRNRLDGQKLLLTLRFYALGTMLI 330
           SK GHV+ +        KLLL L F  LG M I
Sbjct: 40  SKDGHVIDEHDQFFRDHKLLLVL-FRVLGVMPI 71


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 298 SKAGHVVADRRNRLDGQKLLLTLRFYALGTMLI 330
           SK GHV+ +        KLLL L F  LG M I
Sbjct: 40  SKDGHVIDEHDQFFRDHKLLLVL-FRVLGVMPI 71


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 298 SKAGHVVADRRNRLDGQKLLLTLRFYALGTMLI 330
           SK GHV+ +        KLLL L F  LG M I
Sbjct: 40  SKDGHVIDEHDQFFRDHKLLLVL-FRVLGVMPI 71


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 232 AVKKQNPTAAAIVEVDKYFDEPLVSRRTTDP 262
           A+ +  P+ +A  +VD +   PL S  TT P
Sbjct: 50  AILQVRPSTSAAADVDGWQVTPLPSDGTTSP 80


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,532
Number of Sequences: 317
Number of extensions: 4017
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 474
length of database: 114,650
effective HSP length: 59
effective length of query: 415
effective length of database: 95,947
effective search space: 39818005
effective search space used: 39818005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)