GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002202-TA|BGIBMGA002202-PA|IPR008906|HAT dimerisation
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    35   0.028
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    28   3.3  
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    27   5.7  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   7.5  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   10.0 
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   10.0 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    26   10.0 

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 34.7 bits (76), Expect = 0.028
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 11  RRSVLASERLTATQRQLGEKPLKVKQDVITRWNSIYDMFERILEIKKSIIST 62
           R++ LA +++ A  R+  E  L V ++ I RW  + D F+ I E +   + T
Sbjct: 187 RQAALAVKKMDAEYRETNELLLTVTREWIDRWTEVCDAFQHIEEYRLEFLKT 238


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 77  DLQILIKSCELFLHFKSVTEIMSGEKH-VTVSQIIV 111
           D   L+  C  F HF+S+ +I + E+H + V Q I+
Sbjct: 230 DQSRLVTDCPKFYHFQSMPDIWNEEQHSIFVQQFIL 265


>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 444 QIPFQAMDDDNLQTMEVQDSKNRTELIE 471
           Q P     DD L T  V DSKN T+ +E
Sbjct: 3   QFPALEDFDDGLVTAPVDDSKNNTDFLE 30


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 236 QNPTAAAIVEVDKYFDEPLVSRRTTDPILWWYMKRRTYPRLYDVVKKHFCIPATSTPSER 295
           +N     +  +D+ + +P    R  + + W     R++P  +D+         T+TP   
Sbjct: 504 ENTARLIMRRLDRVYYKPEQVIRANEEVAW-----RSFPPTFDLTITPRA--TTTTPDIL 556

Query: 296 IFSKAGHVVADRRNRLDGQKLLLTLRFYALGTMLISVADFVGVSKSTASVHDISGAIAIL 355
           I S   ++  +  + L  + +L  +   AL        D + +S    SVH    A  IL
Sbjct: 557 IHSLCVYLYNNGVSLLRTRAMLCHIYHEALQNRFYKARDMLLMSHLQDSVHAADIATQIL 616

Query: 356 YNKYIV 361
           +N+ +V
Sbjct: 617 HNRTMV 622


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 103 HVTVSQIIVLANLLKKKCEVFIQESDNIPQSVRNMAMRFLTDLTTRFRNVEDNKLLAVST 162
           H   S II+  ++LK+       E  N   SV+N  + F T    R   V D     +ST
Sbjct: 528 HAFTSSIIIFISILKRPLASICSEDLNCLISVKNRLISFETHGFVRLNVVMDALESMIST 587


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 142 LTDLTTRFRNVEDNKLLAVSTLLDPRFKTYG 172
           +TD+ +  + + +N L + +T ++ RFK YG
Sbjct: 21  ITDVASAVKELVENSLDSGATTIEIRFKNYG 51


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 222 WDDFDLKVVDAVKKQ---NPTAAAIVEVDKYFD 251
           WD+ D +VVD ++ +   N        VD+YFD
Sbjct: 12  WDELDTQVVDKIENEYHNNTIGLNGYSVDEYFD 44


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,812
Number of Sequences: 5004
Number of extensions: 82757
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 9
length of query: 474
length of database: 2,362,478
effective HSP length: 75
effective length of query: 399
effective length of database: 1,987,178
effective search space: 792884022
effective search space used: 792884022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)