Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002202-TA|BGIBMGA002202-PA|IPR008906|HAT dimerisation
(474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53345| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 2e-06
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013) 51 2e-06
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8) 49 7e-06
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-04
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.018
SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25) 36 0.054
SB_46987| Best HMM Match : Sigma70_r4 (HMM E-Value=1.4) 36 0.054
SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.22
SB_17229| Best HMM Match : DUF635 (HMM E-Value=0.25) 33 0.38
SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.50
SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8) 33 0.66
SB_16068| Best HMM Match : hATC (HMM E-Value=0.31) 32 0.87
SB_785| Best HMM Match : hATC (HMM E-Value=0.13) 30 3.5
SB_28134| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_24646| Best HMM Match : hATC (HMM E-Value=0.024) 30 4.7
SB_20300| Best HMM Match : hATC (HMM E-Value=0.036) 30 4.7
SB_14647| Best HMM Match : hATC (HMM E-Value=0.021) 30 4.7
SB_13614| Best HMM Match : hATC (HMM E-Value=0.45) 30 4.7
SB_12512| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_11341| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_10213| Best HMM Match : hATC (HMM E-Value=0.024) 30 4.7
SB_9904| Best HMM Match : SMC_hinge (HMM E-Value=3.3) 30 4.7
SB_6514| Best HMM Match : hATC (HMM E-Value=0.024) 30 4.7
SB_1| Best HMM Match : HTH_7 (HMM E-Value=5.6) 30 4.7
SB_51068| Best HMM Match : hATC (HMM E-Value=0.024) 30 4.7
SB_48175| Best HMM Match : hATC (HMM E-Value=0.024) 30 4.7
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038) 30 4.7
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 30 4.7
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022) 30 4.7
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 29 6.2
SB_22805| Best HMM Match : hATC (HMM E-Value=0.00022) 29 6.2
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
>SB_53345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 51.2 bits (117), Expect = 2e-06
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 315 KLLLTLRFYALGTMLISVADFVGVSKSTAS--VHDISGAIAILYNKYIVMHPNHVDK--- 369
++L+ LR++A G L + D G+ KST S + D+S A+ ++I P+ +K
Sbjct: 218 QVLVALRYFASGNFLEVIGDTFGLPKSTVSRCITDVSKALVANKEEFIAW-PSDEEKRQI 276
Query: 370 ---FFQYGQFPRVLGAIDCTHIRIQSP 393
FF FP V+G ID TH+RIQ P
Sbjct: 277 KEAFFAKKGFPGVIGCIDGTHVRIQGP 303
Score = 39.1 bits (87), Expect = 0.008
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 389 RIQSPKTFGVSKRRFLVISLSMRLSLENIQKLIIATAVLHNICRIHN 435
R++ +TFG+ KRRF ++ +R+ LI A AVLHNI I N
Sbjct: 404 RVKIEQTFGIFKRRFHLMHTEIRVDPSKATLLIGACAVLHNIAIIRN 450
>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
Length = 427
Score = 51.2 bits (117), Expect = 2e-06
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 315 KLLLTLRFYALGTMLISVADFVGVSKSTAS--VHDISGAIAILYNKYIVMHPNHVDK--- 369
++L+ LR++A G L + D G+ KST S + D+S A+ ++I P+ +K
Sbjct: 178 QVLVALRYFASGNFLEVIGDTFGLPKSTVSRCITDVSKALVANKEEFIAW-PSDEEKRQI 236
Query: 370 ---FFQYGQFPRVLGAIDCTHIRIQSP 393
FF FP V+G ID TH+RIQ P
Sbjct: 237 KEAFFAKKGFPGVIGCIDGTHVRIQGP 263
Score = 39.1 bits (87), Expect = 0.008
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 389 RIQSPKTFGVSKRRFLVISLSMRLSLENIQKLIIATAVLHNICRIHN 435
R++ +TFG+ KRRF ++ +R+ LI A AVLHNI I N
Sbjct: 364 RVKIEQTFGIFKRRFHLMHTEIRVDPSKATLLIGACAVLHNIAIIRN 410
>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2061
Score = 50.4 bits (115), Expect = 3e-06
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 315 KLLLTLRFYALGTMLISVADFVGVSKSTAS--VHDISGAIAILYNKYIVMHPNHVDK--- 369
++L+ LRFYA G+ L + D G+ KST S V D++ A+ +++I +
Sbjct: 1792 QVLVALRFYASGSFLQIIGDTFGLPKSTVSRCVSDVTRALVSKADRFIKWPSRERQREIK 1851
Query: 370 --FFQYGQFPRVLGAIDCTHIRIQSP 393
F+ FP V+G ID TH+++Q+P
Sbjct: 1852 QAFYDKHGFPGVIGCIDGTHVKLQAP 1877
Score = 39.9 bits (89), Expect = 0.004
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 389 RIQSPKTFGVSKRRFLVISLSMRLSLENIQKLIIATAVLHNICRIHN-LQETPA 441
R++ + FG+ KRRF ++ +R+ E + +LI A AVLHNI + N + + PA
Sbjct: 1978 RVKIEQCFGLFKRRFHLMHGEVRMKPEKVSQLIGACAVLHNIAILRNDIYDGPA 2031
>SB_48180| Best HMM Match : Sigma70_r4 (HMM E-Value=8)
Length = 183
Score = 49.2 bits (112), Expect = 7e-06
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 315 KLLLTLRFYALGTMLISVADFVGVSKSTAS--VHDISGAIAILYNKYIVMHPNHVDK--- 369
++L+ LRFYA G+ L + D G+ KST S V D++ A+ ++I +
Sbjct: 73 QVLVALRFYASGSFLQIIGDTFGLPKSTVSRCVSDVTRALVSKAYRFIKWPSRERQREIK 132
Query: 370 --FFQYGQFPRVLGAIDCTHIRIQSP 393
F+ FP V+G ID TH+++Q+P
Sbjct: 133 QAFYDKHGFPGVIGCIDGTHVKLQAP 158
>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 42.7 bits (96), Expect = 6e-04
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 4 KAIVEIFRRSVLASERLTATQRQLGEKPLKVKQDVITRWNSIYDMFERILEIKKSIISTI 63
K IV F S E L Q+ L K + + TRW S M ERILE + ++ +
Sbjct: 242 KKIVSHFSHSWKKKEALKTVQQDLHLKQRSLITECPTRWGSRQAMIERILEQQNAVSKVL 301
Query: 64 AIDYPSTPNLAP--GDLQILIKSCELFLHFKSVTEIMSGEKHVTVSQIIVLANLLKK 118
D T ++ P D+++L K T+ MS E + T L +L KK
Sbjct: 302 GTD-KGTRHIVPTWQDIEVLESINTELAPLKEFTDAMSRESYATYVPADDLDDLKKK 357
>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 37.9 bits (84), Expect = 0.018
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 315 KLLLTLRFYALGTMLISVADFVGVSKSTASVHDISGAIAILYNKYIVMHPNHVDK----- 369
++L+ LR++A G L S VS+ + D+S + + NK + P+ +K
Sbjct: 1338 QVLVALRYFASGNFLEST-----VSRC---ITDVSKEL-VANNKEFIAWPSDEEKTQIKK 1388
Query: 370 -FFQYGQFPRVLGAIDCTHIRIQSP 393
FF FP V+G ID TH+RIQ P
Sbjct: 1389 SFFAKKGFPGVIGCIDGTHVRIQGP 1413
>SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)
Length = 863
Score = 36.3 bits (80), Expect = 0.054
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 11/132 (8%)
Query: 275 RLYDVVKKHFCIPATSTPSERIFSKAGHVVADRRNRLDGQKLLLTLRFYALGTMLISVAD 334
R++ KK F + A E +K + R + ++L LT+R+ A G S++
Sbjct: 33 RMWTQSKKEFQVLALVEAVEPFLTKQETHI--RTSIAPNERLALTIRYLATGETFQSLSF 90
Query: 335 FVGVSKSTAS--VHDISGAIAILYNKYIVMHPNHVD-------KFFQYGQFPRVLGAIDC 385
+ KST S V ++ I + K + PN V+ F+ P +GAID
Sbjct: 91 QFRIGKSTVSKIVLEVCDVIYHVLGKQHLKTPNTVEIWREIAASFYSKWNIPNNIGAIDG 150
Query: 386 THIRIQSPKTFG 397
I ++ P + G
Sbjct: 151 KRILVEKPPSAG 162
>SB_46987| Best HMM Match : Sigma70_r4 (HMM E-Value=1.4)
Length = 252
Score = 36.3 bits (80), Expect = 0.054
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 11/132 (8%)
Query: 275 RLYDVVKKHFCIPATSTPSERIFSKAGHVVADRRNRLDGQKLLLTLRFYALGTMLISVAD 334
R++ K F +P+ E +K + R + ++L LT+R+ A G S++
Sbjct: 33 RVWTQSMKEFQVPSIVEAVEPFLTKQETHI--RTSIAPNERLALTIRYLATGETFQSLSL 90
Query: 335 FVGVSKSTAS--VHDISGAIAILYNKYIVMHPNHVD-------KFFQYGQFPRVLGAIDC 385
+ KST S V ++ I + K + PN V+ F+ P +GAID
Sbjct: 91 QFRIGKSTVSKIVLEVCDVIYHVLGKQHLKTPNTVEIWREIAASFYCKWNIPNNIGAIDG 150
Query: 386 THIRIQSPKTFG 397
I IQ P + G
Sbjct: 151 KRILIQKPPSAG 162
>SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 34.3 bits (75), Expect = 0.22
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 331 SVADFVGVSKSTAS--VHDISGAIAILYNKYIVMHPNHVDK-----FFQYGQFPRVLGAI 383
S+ DF+ +ST S V D++ A+ +++I + F+ FP V+G I
Sbjct: 27 SLDDFLNDQESTVSRCVSDVTRALVSKADRFIKWPSRERQREIKQAFYDKHGFPGVIGCI 86
Query: 384 DCTHIRIQSP 393
D TH+++Q+P
Sbjct: 87 DGTHVKLQAP 96
>SB_17229| Best HMM Match : DUF635 (HMM E-Value=0.25)
Length = 158
Score = 33.5 bits (73), Expect = 0.38
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 389 RIQSPKTFGVSKRRFLVISLSMRLSLENIQKLIIATAVLHNICRIHN-LQETPA 441
R++ + FG+ RRF ++ +R+ E + +LI A AVLHNI + N + + PA
Sbjct: 76 RVKIEQCFGLF-RRFHLMHGEVRMKPEKVSQLIGACAVLHNIAILRNDIYDGPA 128
>SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 33.1 bits (72), Expect = 0.50
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 209 QNVTPETP--EKPSIWDDF----DLKVVDAVKKQNPTAAAIVEVDKYFDEPLVSRRTTDP 262
QNV+PE P P W+ F D ++ +K + P A +V
Sbjct: 143 QNVSPEKPLANVPYFWECFPFLNDDCIIYGLKAELPAYLAATA-------DVVINTEERK 195
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 196 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 241
>SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8)
Length = 213
Score = 32.7 bits (71), Expect = 0.66
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 315 KLLLTLRFYALGTMLISVADFVGVSKSTAS--VHDISGAI 352
++L+ LRFYA G+ L + D G+ KST S V D++ A+
Sbjct: 73 QVLVALRFYASGSFLQIIGDTFGLPKSTVSRCVSDVTRAL 112
>SB_16068| Best HMM Match : hATC (HMM E-Value=0.31)
Length = 109
Score = 32.3 bits (70), Expect = 0.87
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 249 YFDEPLVSRRTTDPILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
YF E +V + WW+ + P VKK + +S ++R+FS D++
Sbjct: 31 YFLEDVVINTEERNVKWWHNHKEQLPHWASAVKKVLLVQPSSAAAKRVFSVLNSAFNDQQ 90
>SB_785| Best HMM Match : hATC (HMM E-Value=0.13)
Length = 205
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRRNR 310
+ WW+ + P VKK + +S +ER+FS D++ +
Sbjct: 141 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNFAFNDQQEQ 188
>SB_28134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.9 bits (64), Expect = 4.7
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 209 QNVTPETP--EKPSIWDDFDLKVVDAVKKQNPTAAAIVEVDKYFDEPLVSRRTTDPILWW 266
QNV+ E P P W+ D ++++ + + P A +V + WW
Sbjct: 254 QNVSREKPLANVPYFWECNDDRIINGLIAELPAYLAATA-------DVVINTEERKVKWW 306
Query: 267 YMKRRTYPRLYDVVKKHFCIPATSTPSERIFS 298
+ + P V+K +S +ER+FS
Sbjct: 307 HDHKEQLPHFASAVEKVLLAQPSSAAAERLFS 338
>SB_24646| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 121
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 57 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 102
>SB_20300| Best HMM Match : hATC (HMM E-Value=0.036)
Length = 423
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 359 VKWWHDHKEPLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 404
>SB_14647| Best HMM Match : hATC (HMM E-Value=0.021)
Length = 121
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 57 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 102
>SB_13614| Best HMM Match : hATC (HMM E-Value=0.45)
Length = 228
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 173 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 218
>SB_12512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 3 VKAIVEIFRRSVLASERLTATQRQLGEKPLKVKQDVITRWNSIYDMFERILEIKKSIIST 62
+KA+ E F R++ A + LT T R+ LK W++ +F ++ KK I +
Sbjct: 78 MKALTESFLRTIKAFQNLTQTTRRYLVMMLKPANIESWTWDASLHIFPMFIDAKKLAILS 137
Query: 63 I 63
+
Sbjct: 138 V 138
>SB_11341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 359 VKWWHDHKEPLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 404
>SB_10213| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 105
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 41 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 86
>SB_9904| Best HMM Match : SMC_hinge (HMM E-Value=3.3)
Length = 252
Score = 29.9 bits (64), Expect = 4.7
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 209 QNVTPETP--EKPSIWDDFDLKVVDAVKKQNPTAAAIVEVDKYFDEPLVSRRTTDPILWW 266
QNV+ E P P W+ D ++++ + + P A +V + WW
Sbjct: 159 QNVSREKPLANVPYFWECNDDRIINGLIAELPAYLAATA-------DVVINTEERKVKWW 211
Query: 267 YMKRRTYPRLYDVVKKHFCIPATSTPSERIFS 298
+ + P V+K +S +ER+FS
Sbjct: 212 HDHKEQLPHFASAVEKVLLAQPSSAAAERLFS 243
>SB_6514| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 556 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 601
>SB_1| Best HMM Match : HTH_7 (HMM E-Value=5.6)
Length = 88
Score = 29.9 bits (64), Expect = 4.7
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 308 RNRLDGQKLLLTLRFYALGTMLISVADFVGVSKSTASV--HDIS-GAIAILYNKYIVMHP 364
R RL + L + A G+ L +V D GV++STAS+ +D+ I LY++Y+ +
Sbjct: 8 RRRLRRLEDDLIAKRLAHGSSLCTVRDLFGVAESTASIIFNDVCIQLIMTLYDRYVCLPK 67
Query: 365 N 365
N
Sbjct: 68 N 68
>SB_51068| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 281
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 217 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 262
>SB_48175| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 556 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 601
>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
Length = 676
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 612 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 657
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 3552 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 3597
>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
Length = 865
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 609 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 654
>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 263 ILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVADRR 308
+ WW+ + P VKK + +S +ER+FS D++
Sbjct: 728 VKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNSAFNDQQ 773
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 29.5 bits (63), Expect = 6.2
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 247 DKYFDEPLVSRRTTDPILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIFSKAGHVVAD 306
D YFD + + RT ++ + + R +P + ++ + + R+ S + ++D
Sbjct: 546 DSYFDPLVANWRTQYVVMDAHKRSRLFPLVVPHLRAYTVYRFRVVAANRVGSSSPSNISD 605
Query: 307 RRNRLD-GQKLLLTLRFYALGTMLISVADFVGVSKSTASV 345
L+ G+ L+LTL LG+ + ++ G K V
Sbjct: 606 DARTLEAGKPLILTLSSIDLGSSVCNLRVIKGNVKGEIQV 645
>SB_22805| Best HMM Match : hATC (HMM E-Value=0.00022)
Length = 310
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 240 AAAIVEVDKYFD--EPLVSRRTTDPILWWYMKRRTYPRLYDVVKKHFCIPATSTPSERIF 297
A+ + E+ Y + +V + + WW T P L KK I +S +ER+F
Sbjct: 218 ASLVEELPSYLAAADGVVCTTEEEKVSWWADHVDTLPNLSVATKKILLIKPSSAAAERVF 277
Query: 298 SKAGHVVADRRN 309
S + + ++N
Sbjct: 278 SLLQNAFSRQQN 289
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 29.1 bits (62), Expect = 8.1
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 8 EIFRRSVLA---SERLTATQRQLGEKPLKVKQDVITRWNSIYDMFERILEIKKSIISTI 63
E+ +R V A SE +TA QL E+ K KQ+++ N+ + + I E S IS I
Sbjct: 1499 ELEKREVQAKQTSETMTANISQLNEREKKHKQEMLVLENNWKEKYSEIEERYSSQISNI 1557
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.136 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,411,067
Number of Sequences: 59808
Number of extensions: 550416
Number of successful extensions: 1136
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 39
length of query: 474
length of database: 16,821,457
effective HSP length: 85
effective length of query: 389
effective length of database: 11,737,777
effective search space: 4565995253
effective search space used: 4565995253
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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