GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002201-TA|BGIBMGA002201-PA|undefined
         (134 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.31 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   8.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   8.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 3   NNNDTQAQGNGRRQPQSRGNPAGGMTQGS 31
           NN  ++AQG   R  ++ GN  GG+  G+
Sbjct: 398 NNTSSRAQGETSRNSKNSGN-GGGVQDGA 425



 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 36  RAYEFQQQQALRNDWNQVREFEQREQKSRG 65
           R YE  ++  LR  W+  R+ + R Q + G
Sbjct: 204 RGYEDFRRDFLRTYWSAKRQRDIRFQIATG 233


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 94  IKPYDLLESQLVQGDGM 110
           I P+D  E  + +GDG+
Sbjct: 605 ILPFDFGEDSINEGDGV 621


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 1   MANNNDTQAQGNGRRQPQSRGNPAG 25
           +  NND    G G  +   RG+  G
Sbjct: 84  LGENNDDSGGGRGGGRDGDRGDGGG 108


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,446
Number of Sequences: 317
Number of extensions: 825
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 134
length of database: 114,650
effective HSP length: 51
effective length of query: 83
effective length of database: 98,483
effective search space:  8174089
effective search space used:  8174089
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)