GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002201-TA|BGIBMGA002201-PA|undefined
         (134 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   5.3  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    24   7.0  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    24   9.3  
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    24   9.3  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 92  TSIKPYDLLESQLVQGDGM 110
           TS+ PY L  SQL+ G  M
Sbjct: 495 TSVPPYSLQNSQLMNGTSM 513


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 3   NNNDTQAQGNGRRQPQSRGNPA--GGMTQG 30
           NNN+ Q  GN   Q  +  N +  GG +QG
Sbjct: 614 NNNNNQNYGNNNNQNYNNNNNSSQGGNSQG 643


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 33  NDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQR 69
           N   AY+ Q+  A     N V++ E+RE  SR P ++
Sbjct: 126 NGETAYDSQEASAAAR--NLVKKVEKRELHSRPPKRK 160


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
          homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 9  AQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEF 40
          AQG  +++  S  N  G +T+ S+N ++   +
Sbjct: 2  AQGEFKKKKNSSANKGGRVTKHSKNPKKGARY 33


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,942
Number of Sequences: 5004
Number of extensions: 16464
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 5
length of query: 134
length of database: 2,362,478
effective HSP length: 66
effective length of query: 68
effective length of database: 2,032,214
effective search space: 138190552
effective search space used: 138190552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)