Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002201-TA|BGIBMGA002201-PA|undefined
(134 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0469 - 19424703-19424906,19425073-19425142,19425409-194263... 31 0.31
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 30 0.72
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 29 1.7
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 27 3.8
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 27 5.1
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 27 5.1
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140... 27 5.1
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 27 6.7
07_01_1217 - 11624586-11624936,11625311-11625424,11625495-116255... 27 6.7
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 27 6.7
01_06_1410 + 37116414-37116695,37116796-37116902,37117148-371176... 27 6.7
10_08_0806 + 20709599-20710597 26 8.9
03_05_0555 + 25555081-25555432,25555488-25555699 26 8.9
>12_02_0469 -
19424703-19424906,19425073-19425142,19425409-19426302,
19426975-19427124,19427382-19427572,19427713-19427835
Length = 543
Score = 31.1 bits (67), Expect = 0.31
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 57 EQREQKSRGPTQRSTNWXXXXXXXXXXXXXXXXXXTSIKPYDLLESQLVQGDGMILNVVL 116
E RE+++ ++ S +W TS +DL++ +L + DG+ ++VV
Sbjct: 189 ELREKEAEFDSKASQSWPATITDSPEIEESAGHIFTSAN-FDLVQKELQKLDGLHVDVVQ 247
Query: 117 NYKGLRLYVT---KFSSKLYI 134
+ KG R VT K + K Y+
Sbjct: 248 DGKGERYMVTSEQKSARKCYV 268
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 29.9 bits (64), Expect = 0.72
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 57 EQREQKSRGPTQRSTNWXXXXXXXXXXXXXXXXXXTSIKPYDLLESQLVQGDGMILNVVL 116
E RE+ + ++ S +W TS +DL++ +L + DG+ ++VV
Sbjct: 132 ELREKVAEFDSKASQSWPATITDSPEIEESAGHIFTSAN-FDLVQKELQKLDGLHVDVVQ 190
Query: 117 NYKGLRLYVT---KFSSKLYI 134
+ KG R VT K + K Y+
Sbjct: 191 DGKGERYMVTSKQKSARKCYV 211
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 4 NNDTQAQGNGRRQPQS-RGNPAGGMTQGSRNDRRAYEFQQQQALRN 48
N Q +GNG Q + GN GG Q N FQQ++A+ +
Sbjct: 420 NGGYQGRGNGGYQQRGYNGNNNGGYQQRGYNGNNNGRFQQERAVNS 465
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 2 ANNNDTQAQGNGRRQPQSRGNPAGG--MTQGSRNDRRAYEFQQQQALRNDWNQVREFEQR 59
ANNN + R +RG+ + G N+ A+ N W+ R+++
Sbjct: 703 ANNNQGSFSESRDRSTYNRGSHSAQPPYKSGYGNNNNAWS-SNNNGSNNAWSSTRDYDNG 761
Query: 60 EQKSRGPTQRSTNW 73
+ P S+ W
Sbjct: 762 GRSDNNPYYNSSTW 775
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 8 QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPT 67
Q QG +Q QS+G+P + + + QQQQ Q ++ +Q +Q+ + P
Sbjct: 706 QTQGLPLQQQQSQGHPL------QQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQ 759
Query: 68 Q 68
Q
Sbjct: 760 Q 760
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 10 QGNGRRQPQSRGNPAGGMTQGSRND-----RRAYE 39
+G G RQP G GG + G D RRAYE
Sbjct: 132 RGRGPRQPYRGGGRRGGYSDGQSGDDYGRPRRAYE 166
>05_01_0193 +
1400963-1401083,1401671-1401888,1401983-1402172,
1402391-1402782,1402971-1403381
Length = 443
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 16 QPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSR 64
+PQ+R + +T ++ D+ ++ Q+ A +W VR+ + + K +
Sbjct: 380 EPQNRKDEDPSVTGNTKKDQSTFDRQRAVAEAIEWGSVRQKQMAQIKEK 428
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 13 GRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRSTN 72
G + RG GG + + + ++++A +D EF ++K R TQ++ N
Sbjct: 240 GHNEGGVRGGRGGGYKELDEEELEEVKRRRKEAEEDDGEMYDEFGNLKKKFRAKTQQTEN 299
>07_01_1217 -
11624586-11624936,11625311-11625424,11625495-11625576,
11626762-11626845,11627430-11627639,11627756-11628099,
11628215-11628331
Length = 433
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 13 GRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRSTN 72
G + RG GG + + + ++++A +D EF ++K R TQ++ N
Sbjct: 245 GHNEGGVRGGRGGGYKELDEEELEEVKRRRKEAEEDDGEMYDEFGNLKKKFRAKTQQTEN 304
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 11 GNGRRQPQSRGNPAGGMTQGSRND--RRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQ 68
G R+P+SRGN +G R D + E + A R + + + ++ Q ++G +
Sbjct: 705 GADTREPRSRGNSKQDDAKGERKDYQKDVREKSRDSADRREKGKHEKEDRSRQTTKGSSS 764
Query: 69 RST 71
S+
Sbjct: 765 HSS 767
>01_06_1410 +
37116414-37116695,37116796-37116902,37117148-37117649,
37118211-37118326,37119007-37119211
Length = 403
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 6 DTQAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYE 39
++ QG GRR + RG GG G AY+
Sbjct: 9 ESHRQGRGRRASRFRGGGGGGDEDGDELPSSAYD 42
>10_08_0806 + 20709599-20710597
Length = 332
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 1 MANNNDTQAQGNGRRQPQSR 20
M++++ + +QG GRR+P SR
Sbjct: 75 MSSSSSSSSQGGGRRRPMSR 94
>03_05_0555 + 25555081-25555432,25555488-25555699
Length = 187
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 8 QAQGNGRRQPQSRGNPAGGMTQGSR 32
Q QG RRQP S+ P GG +G+R
Sbjct: 54 QRQGIARRQPTSQVEP-GGAAKGTR 77
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,838
Number of Sequences: 37544
Number of extensions: 121300
Number of successful extensions: 295
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 13
length of query: 134
length of database: 14,793,348
effective HSP length: 75
effective length of query: 59
effective length of database: 11,977,548
effective search space: 706675332
effective search space used: 706675332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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