GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002201-TA|BGIBMGA002201-PA|undefined
         (134 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           36   5e-04
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              29   0.053
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    28   0.12 
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    25   0.66 
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   2.6  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   4.6  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    22   6.1  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    22   8.1  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 16  QPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRSTNW 73
           Q    G PAGG  Q S++  + Y+ QQQQ  +       + +Q++Q+ +     S  W
Sbjct: 388 QSAQAGGPAGGQAQPSQSAAQQYQPQQQQQQQQQQQPQSQQQQQQQQQQQQQSGSATW 445


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 0.053
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 8   QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPT 67
           Q Q   ++Q Q +        Q  +  ++  + QQQ+  + +W Q ++ +Q +Q+ +   
Sbjct: 218 QQQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQQ 277

Query: 68  QR 69
           QR
Sbjct: 278 QR 279



 Score = 25.0 bits (52), Expect = 0.87
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 8   QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQ---ALRNDWNQVREFEQREQKSR 64
           Q +   ++Q Q +        Q  RN +R ++ QQQQ     R    Q R  +Q +Q  R
Sbjct: 230 QQREQQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQQQRVQQQNQQHQR 289

Query: 65  GPTQR 69
              Q+
Sbjct: 290 QQQQQ 294



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 31  SRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQR 69
           SRN RR  +  QQQ  R    Q ++ EQ++Q+ +   Q+
Sbjct: 208 SRN-RRGRQGPQQQEQRQQQQQHQQREQQQQQQQQQQQQ 245



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 8   QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPT 67
           Q +   +++ Q +        Q  +  R+  + Q+QQ L     + R+  Q++Q+S  P 
Sbjct: 271 QREQQQQQRVQQQNQQHQRQQQQQQQQRQQQQQQEQQELWTTVVRRRQNTQQQQQSNQPQ 330

Query: 68  QR 69
           Q+
Sbjct: 331 QQ 332



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 41  QQQQALRNDWNQVREFEQREQKSRGP 66
           QQQQ  R    Q+R+  Q++Q+ R P
Sbjct: 332 QQQQTGRYQPPQMRQQLQQQQQQRQP 357


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 8   QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSR 64
           Q Q   +RQ Q R        Q  +  +R  + QQQQ  +    Q ++ +Q++Q+ R
Sbjct: 324 QQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQPR 380



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 32  RNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQR 69
           R +R   + QQQQ  +    Q ++ +QR+Q+ +   QR
Sbjct: 181 RRERERQQQQQQQQQQQQQQQQQQQQQRQQQQQCQQQR 218



 Score = 25.4 bits (53), Expect = 0.66
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 8   QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPT 67
           Q QG     PQ R        Q  +  ++    QQQ+  +    Q ++ +Q++Q+ R   
Sbjct: 291 QQQGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQ 350

Query: 68  QR 69
           QR
Sbjct: 351 QR 352



 Score = 25.0 bits (52), Expect = 0.87
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 8   QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRND-WNQVREFEQREQKSRGP 66
           Q +   +RQ Q +        Q  +  R+  + QQQQ  +     Q ++++Q++Q+ + P
Sbjct: 320 QQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQP 379

Query: 67  TQ 68
            Q
Sbjct: 380 RQ 381



 Score = 25.0 bits (52), Expect = 0.87
 Identities = 18/57 (31%), Positives = 23/57 (40%)

Query: 14  RRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRS 70
           +RQ Q +        QG R        Q+QQ       Q R  +QR Q+ R   QRS
Sbjct: 432 QRQLQQQQQQQQQQQQGERYVPPQLRQQRQQQQPQQQQQQRPQQQRPQQQRPQQQRS 488



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 25  GGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQR 69
           G  +Q  R  ++  + QQQQ  R    Q+R+  Q++Q+ R   Q+
Sbjct: 241 GRPSQRHRQPQQQQQQQQQQGERYVPPQLRQQRQQQQRPRQQQQQ 285



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 4   NNDTQAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKS 63
           N +T  +   R + + R        Q  +  ++  + QQQ+  +    Q R+ + ++Q+ 
Sbjct: 168 NRETARKRQQRLRRRERERQQQQQQQQQQQQQQQQQQQQQRQQQQQCQQQRQQQPQQQQL 227

Query: 64  RGPTQR 69
           + P Q+
Sbjct: 228 QQPQQQ 233



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 8   QAQGNGRRQPQSRGN----PAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKS 63
           Q Q   ++Q Q +G     P     +  +  ++  + QQQQ  +    Q R+ +QR+Q+ 
Sbjct: 281 QQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQ 340

Query: 64  RGPTQR 69
           +   Q+
Sbjct: 341 QQQQQQ 346



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 14  RRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQR 69
           R+Q Q + +      Q  +  ++  + Q+QQ  R    Q ++ +QR+Q+ R   Q+
Sbjct: 303 RQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQQ-QQRQQQQRQQQQQ 357



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 8   QAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQ 61
           Q Q   +RQ Q R        +  +  ++  + QQQQ  +    Q +  +Q++Q
Sbjct: 315 QQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQ 368



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 14  RRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQR 69
           +RQ Q          Q  +  +R  + QQQQ  +    Q ++ +Q++++ +   Q+
Sbjct: 305 QRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQ 360


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 14  RRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQK 62
           RR+P+   +      Q  +  R   + QQQQ  +    Q ++ +Q++Q+
Sbjct: 169 RRKPRGINSGKSSSQQREQQQRSLQQQQQQQQQQQQQQQEQQQQQQQQR 217


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 17   PQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPT 67
            P+SR  P    T   R  RR Y   Q +  R D       + R+++ R PT
Sbjct: 1111 PRSRRLPPSPRTTEMRRRRRNYMQLQYRRRRRDGELGDVPQGRQRRGRIPT 1161


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 32  RNDRRAYEFQQQQALRNDWNQVREFEQREQKSR 64
           R + RA E ++    R    ++RE  +REQ+ +
Sbjct: 453 REEERAREAREAAIEREKERELREQREREQREK 485


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 5    NDTQAQGNGRRQPQSRGNPAGGMTQGSRNDRR 36
            +D   Q +G R     G P G  T G+ ++ R
Sbjct: 1004 SDNSEQSSGGRLSSGGGPPVGTPTDGAPSEGR 1035


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 39  EFQQQQALRNDWNQVREFEQREQKS 63
           + QQQQ  +    Q  E EQ++Q++
Sbjct: 901 QHQQQQQQQQQQQQQHEHEQQQQQN 925


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,326
Number of Sequences: 2123
Number of extensions: 4362
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 27
length of query: 134
length of database: 516,269
effective HSP length: 58
effective length of query: 76
effective length of database: 393,135
effective search space: 29878260
effective search space used: 29878260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)