GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002201-TA|BGIBMGA002201-PA|undefined
         (134 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF154915-1|AAF79044.1|  275|Homo sapiens transcription factor HO...    31   0.95 
BC041085-1|AAH41085.1|  865|Homo sapiens leucine-rich repeats an...    29   3.8  
L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.           29   6.7  
AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.         29   6.7  
AB058719-1|BAB47445.1| 1162|Homo sapiens KIAA1816 protein protein.     29   6.7  

>AF154915-1|AAF79044.1|  275|Homo sapiens transcription factor
           HOXD12 protein.
          Length = 275

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 12  NGRRQPQSRGNPA-GGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQK 62
           +G+R P S G PA GG    +R  R+ Y  QQ   L N++  V EF  R+++
Sbjct: 187 DGKRCPCSPGRPAVGGGPGEARKKRKPYTKQQIAELENEF-LVNEFINRQKR 237


>BC041085-1|AAH41085.1|  865|Homo sapiens leucine-rich repeats and
           IQ motif containing 2 protein.
          Length = 865

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 32  RNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRSTNW 73
           R++ R  +F Q++A R  WNQVR  +  +Q      QR ++W
Sbjct: 611 RDEERIKKFVQEEAFRFLWNQVRSLQVWQQT---VDQRLSSW 649


>L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.
          Length = 1898

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 13  GRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRND---WNQVREFEQREQK 62
           G+R+ Q R      + +G     +    +Q+   R D   W Q +E+++RE++
Sbjct: 134 GQRRRQKRQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQRQEWQEREER 186


>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
          Length = 1943

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 13  GRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRND---WNQVREFEQREQK 62
           G+R+ Q R      + +G     +    +Q+   R D   W Q +E+++RE++
Sbjct: 134 GQRRRQKRQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQRQEWQEREER 186


>AB058719-1|BAB47445.1| 1162|Homo sapiens KIAA1816 protein protein.
          Length = 1162

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/57 (21%), Positives = 31/57 (54%)

Query: 17  PQSRGNPAGGMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRSTNW 73
           P S  +PA  + Q +   ++  +  QQ+  +    Q ++ +Q++Q+ +  + +++NW
Sbjct: 487 PSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQTSNW 543


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,919,622
Number of Sequences: 224733
Number of extensions: 547440
Number of successful extensions: 1545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1541
Number of HSP's gapped (non-prelim): 20
length of query: 134
length of database: 73,234,838
effective HSP length: 82
effective length of query: 52
effective length of database: 54,806,732
effective search space: 2849950064
effective search space used: 2849950064
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)