GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002201-TA|BGIBMGA002201-PA|undefined
         (134 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.21 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.28 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   3.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   4.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 4   NNDTQAQGNGRRQPQSRGNPAGGMTQGSR-NDRRAYEFQQQQALRNDWNQVREFEQREQK 62
           N D Q   N     Q+  N       G+R ND R  + +Q    +ND N+     Q + K
Sbjct: 431 NADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQND-NKQNGNRQNDNK 489

Query: 63  SRGPTQ 68
             G  Q
Sbjct: 490 QNGNRQ 495


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 41  QQQQALRNDWNQVREFEQREQKSRGP 66
           QQQQ  +    Q ++ +Q++Q+ RGP
Sbjct: 833 QQQQQQQQPQQQQQQQQQQQQQQRGP 858



 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 26   GMTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQK 62
            G+ +  RN     + QQQQ  +    Q ++ +Q++Q+
Sbjct: 1197 GLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQ 1233



 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 3   NNNDTQAQGNGRRQPQSRGNPAGGMTQGSRNDRRAYEFQQQQALRND 49
           ++  T  Q   + QPQ +        Q  +  ++  + QQ+  + ND
Sbjct: 816 HHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTND 862



 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 27   MTQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRS 70
            M Q  +  ++  + QQQQ  +    Q  +  +RE    G  + S
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETS 1250


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 32  RNDRRAYEFQQQQALRNDWNQV 53
           RN++R  E  +++ +  DW QV
Sbjct: 403 RNEKRLAEQDRRERMEFDWKQV 424


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 3   NNNDTQAQGNGRRQPQSRGNPAGGM 27
           NNN+  A  NG     S  N  G M
Sbjct: 248 NNNNNGANDNGNGNGASNNNNNGDM 272



 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/32 (25%), Positives = 10/32 (31%)

Query: 3   NNNDTQAQGNGRRQPQSRGNPAGGMTQGSRND 34
           NNN+     N        GN  G     +  D
Sbjct: 240 NNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 36 RAYEFQQQQALRNDWNQVREFEQREQKSRGPTQR 69
          R +   +QQ    +  + RE EQRE   R  +Q+
Sbjct: 57 RQHSKNEQQRKEMEQMREREREQREHSDRVTSQQ 90


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 28 TQGSRNDRRAYEFQQQQALRNDWNQVREFEQREQKSRGPTQRS 70
          T   RN R     Q       ++ + RE  +   + R   +RS
Sbjct: 33 TNRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRAERERS 75


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 114 VVLNYKGLRLYVTKFSSKLYI 134
           V++   G+R Y+TKF S+ ++
Sbjct: 329 VIILPDGIRNYLTKFVSEYWM 349


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 5/21 (23%), Positives = 15/21 (71%)

Query: 100 LESQLVQGDGMILNVVLNYKG 120
           ++ ++++   +I +++LNY G
Sbjct: 779 IDEKILENQNIITHMILNYVG 799


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,539
Number of Sequences: 429
Number of extensions: 1153
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 134
length of database: 140,377
effective HSP length: 52
effective length of query: 82
effective length of database: 118,069
effective search space:  9681658
effective search space used:  9681658
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)