GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002198-TA|BGIBMGA002198-PA|undefined
         (110 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   0.94 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   0.94 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   2.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   6.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   6.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 0.94
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 47  YYLENPESAQYYEQPQQKRGNGNINHEN 74
           Y   NP+  QYY           INH+N
Sbjct: 350 YNYPNPQQ-QYYYNKNHPNSENYINHQN 376


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 0.94
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 47  YYLENPESAQYYEQPQQKRGNGNINHEN 74
           Y   NP+  QYY           INH+N
Sbjct: 298 YNYPNPQQ-QYYYNKNHPNSENYINHQN 324


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 22  AVGAAPPGHQHGYPQH 37
           A+G A P HQ+  P+H
Sbjct: 344 AMGMAAPHHQNFGPRH 359


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 70  INHENAPSRLESLEPDSEVELI 91
           + H  APS  +   PD++V  I
Sbjct: 640 VRHVMAPSTCQPQNPDNDVHSI 661


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 29  GHQHGYPQH 37
           GH H +P H
Sbjct: 360 GHSHAHPMH 368


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 29  GHQHGYPQH 37
           GH H +P H
Sbjct: 360 GHSHAHPMH 368


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,555
Number of Sequences: 317
Number of extensions: 1260
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 110
length of database: 114,650
effective HSP length: 49
effective length of query: 61
effective length of database: 99,117
effective search space:  6046137
effective search space used:  6046137
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)