GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002198-TA|BGIBMGA002198-PA|undefined
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    30   0.096
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   2.7  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    24   6.3  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    23   8.3  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    23   8.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    23   8.3  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    23   8.3  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 29.9 bits (64), Expect = 0.096
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 22  AVGAAPPGH--QHGYPQHAQAQINTLDYYLENPESAQ-YYEQP--QQKRGNGNI 70
           A GAAP  +  Q GYPQ      N  +YY   P  AQ  Y QP    +RG   +
Sbjct: 95  AYGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQPVYAQPATSARRGRSGV 148


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 48  YLENPESAQYYEQPQQKR-------GNGNINHENAPSRLESLEPDSE 87
           YL+  E  + Y Q +  +        NGN+   N+P+  E+L+ D++
Sbjct: 63  YLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAK 109


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 2   DFPGTSSDPNKYLTLAAVCIAVGAAPPGHQH 32
           D P T+   ++   L  VC  + A PPGH +
Sbjct: 153 DSPDTAYFASELKALHPVCDKIIAFPPGHYY 183


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 45  LDYYLENPESAQYYEQPQQKRGNGNI 70
           +D +LENPE+ +  E  +++  N NI
Sbjct: 394 VDKWLENPETLEVKEVLEKRYANLNI 419


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 43  NTLDYYLENPESAQYYEQPQQKRGNGNINHENAPSRLESLEPDSE 87
           NT++  LE P   +  ++P+++RG  +   +     L  L  + E
Sbjct: 96  NTIEENLEVPRKVRKEQKPRRRRGKRSSTVDALNDELNELGENEE 140


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 32  HGYPQHAQAQINTLDYYLENPESAQYYEQPQQK 64
           +G P+   ++I   D++ +NPES +  + P  K
Sbjct: 432 YGLPRDGDSEI---DFFFQNPESFKVQKVPTPK 461


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 67  NGNINHENAPSRLESLEP 84
           N NI HEN P + E  EP
Sbjct: 94  NDNIPHENNPGQQEINEP 111


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,129
Number of Sequences: 5004
Number of extensions: 19413
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 8
length of query: 110
length of database: 2,362,478
effective HSP length: 64
effective length of query: 46
effective length of database: 2,042,222
effective search space: 93942212
effective search space used: 93942212
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)