Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002198-TA|BGIBMGA002198-PA|undefined
(110 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0892 - 8631948-8632168,8632645-8632755,8632930-8633023 30 0.47
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 1.1
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 28 1.4
07_03_0424 - 18060133-18061581 28 1.9
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 28 1.9
01_06_1841 + 40267902-40268485,40269290-40270421 27 2.5
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612... 27 2.5
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 26 5.8
08_02_1055 + 23986258-23986459,23986734-23986825,23987389-239874... 26 7.6
04_04_0997 - 29994369-29994430,29994534-29994622,29994722-29994906 26 7.6
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 26 7.6
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 26 7.6
>12_01_0892 - 8631948-8632168,8632645-8632755,8632930-8633023
Length = 141
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 52 PESAQYYEQPQQKRGNGNINHENAPSRLESLEPDSEVELIPG 93
P+ Q + QP+ GN N+E ++L SL P +E IPG
Sbjct: 12 PQGGQGWNQPRPYYQGGN-NNETQLAQLSSLVPANETGRIPG 52
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/71 (22%), Positives = 24/71 (33%)
Query: 24 GAAPPGHQHGYPQHAQAQINTLDYYLENPESAQYYEQPQQKRGNGNINHENAPSRLESLE 83
G G GY QH N +Y+ + Q G +H P + +
Sbjct: 372 GRGGRGRGRGYHQHNNNHFNNQNYHNGQHHNHHANNHHHQGGNRGGAHHVGTPPNQQQTK 431
Query: 84 PDSEVELIPGA 94
P+ +L GA
Sbjct: 432 PEQHPQLPIGA 442
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 2 DFPGTSSDPNKYLTLAAVC-IAVGAAPPGHQHGYPQHAQA 40
D PG DP+ Y AA A PP H +P H+ A
Sbjct: 17 DDPGADDDPDSYAAAAAPSPSARNPHPPQSVHPHPPHSAA 56
>07_03_0424 - 18060133-18061581
Length = 482
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 4 PGTSSDPNKYLTLAAVCIAVGAAPPGHQHGYPQHAQAQINTLDYYLENPESAQYYEQPQQ 63
P D + L A+ + + P G G+P+HA A + ++ ++ SA +
Sbjct: 44 PAAGDDDDDALAAASPRLRYASIPDGLPDGHPRHAGAAVRLME-SVQTQSSAYRSLLAEL 102
Query: 64 KRGNGN 69
RG+G+
Sbjct: 103 ARGDGD 108
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 24 GAAPPGHQHGYPQHAQAQINTLD 46
G APP + PQ +Q + NTLD
Sbjct: 1038 GGAPPARPNSRPQQSQNRYNTLD 1060
>01_06_1841 + 40267902-40268485,40269290-40270421
Length = 571
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 39 QAQINTLDYYLENPESAQYYEQPQQKRGNGNINHENAPSRLE 80
+A+ T L+ PE AQ ++P+Q G HE L+
Sbjct: 80 EAEDTTEQEALQQPEDAQEQQKPRQSLGEEEAQHEQQQECLQ 121
>01_05_0736 -
24760576-24760690,24760885-24761108,24761188-24761248,
24761909-24763992
Length = 827
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 36 QHAQAQINTLDYYLENPESAQYYEQPQQKRGNGNINHENAPSRLESLEPD 85
+H +A L ENPE + + G G H PS E L P+
Sbjct: 63 EHRRAGRRALSLLPENPEPPPMPGYHRSRYGGGRYGHGLPPSPYEPLRPE 112
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 26 APPGHQHGYPQHAQAQINTLDYYLENPESAQYYEQPQQKRGNGNINHENAPSRLESLEPD 85
+PP H G PQH Q Q NP+ Y + ++R NI P + L
Sbjct: 1470 SPPSHMFGNPQHPQIQ----GMSHSNPQQQTYAMRLAKER---NIQQRMVPQQQNDLPGA 1522
Query: 86 SEV 88
S V
Sbjct: 1523 SAV 1525
>08_02_1055 +
23986258-23986459,23986734-23986825,23987389-23987412,
23987932-23988068,23988533-23988692,23988997-23989006,
23989449-23989726,23990059-23990136
Length = 326
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 GTSSDPNKYLTLAAVCIAVGAAPPGHQHGYPQHA 38
G + DP +Y + A +C+ V +PP G HA
Sbjct: 238 GVARDP-EYTSSAPICLLVFDSPPSCLSGLQNHA 270
>04_04_0997 -
29994369-29994430,29994534-29994622,29994722-29994906
Length = 111
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 14 LTLAAVCIAVGAAPPGHQHGYPQHAQAQINTLDYYLENPESAQY 57
L++A + +A AAPP + +A + D +E+P+ Y
Sbjct: 10 LSVAGLAVAAAAAPPTRRGQEVHLFEATVRVADDGVEDPDEYNY 53
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 34 YPQHAQAQINTLDYYLENPESAQYYEQPQQKRGNGNINHENAPSRL 79
Y + A+ + Y + P+ AQY+ Q + ++N AP R+
Sbjct: 454 YNREAEGYCPIVSYSGDLPKWAQYFPQANKDGSCTDVNSARAPDRM 499
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 27 PPGHQHGYPQHAQAQINTLDYYLENPESAQYYEQPQQKR 65
PP + PQH Q Q L + + Q +Q QQ++
Sbjct: 111 PPQQRQQQPQHIQMQQMLLQRAAQQQQQQQQQQQQQQQQ 149
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.130 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,537
Number of Sequences: 37544
Number of extensions: 129337
Number of successful extensions: 272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 12
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)
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