GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002198-TA|BGIBMGA002198-PA|undefined
         (110 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.068
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.36 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   3.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.5  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              20   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   5.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   5.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            20   5.9  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              20   7.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 0.068
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 30  HQHGYPQHAQAQINTLDYYLENPESAQYYEQPQQKR 65
           H H  PQ  Q Q      +L+  E    Y+Q QQ +
Sbjct: 176 HPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQ 211


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 64  KRGNGNINHENAPSRLESLEPDSEVELIP 92
           KR  GN+     PSR  ++  D  +E+IP
Sbjct: 341 KRTAGNLATREHPSRNFTMSEDGMIEVIP 369


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 48  YLENPESAQYYEQPQQKRGNGNINHEN 74
           Y   P+S  Y+ +P +KR +  +   N
Sbjct: 91  YGSTPDSRDYFSRPFEKRLHSRLPGRN 117


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 30  HQHGYPQHAQAQINTLDYYLENPESAQYYEQPQQKRGNGNINHENAPSRLESLEPDSEVE 89
           HQ  +PQ AQAQ        +  +  Q   Q QQ++       +  P   +   P+ E E
Sbjct: 817 HQSTHPQ-AQAQAQPQ----QQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEE 871


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 56  QYYEQPQQKRGNGNINHENAPSRLESLEPDSEVE 89
           Q Y+Q  + RGNG          L +L P S  E
Sbjct: 503 QVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKE 536


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 55  AQYYEQPQQKRGNGNINHENAPSRLESLEPDSE-VELIPGA 94
           +++Y++ +++  N N N E+  + ++    D E  E   GA
Sbjct: 173 SRHYDRYKEEESNENYNWEHKETHIDWQPEDEECTEATAGA 213


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 67 NGNINHENAPSRLESLEPDSEVE 89
          NGN N +N    ++++  D+E +
Sbjct: 76 NGNFNEKNTRDIVQAVLDDNETD 98


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 51  NPESAQYYEQPQQKRGNGNINHENAPSRLESL 82
           NPE A++ E  +  +  G    E  PSR  +L
Sbjct: 526 NPERAEFIEFSKPFKYQGITILEKKPSRSSTL 557


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 35  PQHAQAQINTLDYYLENPESAQYYEQPQQKRGNGNI 70
           PQ +  + + ++Y L NP   Q    PQ    + +I
Sbjct: 414 PQVSPDRTSPMEYRLYNPALIQSQPSPQYPSTSSHI 449


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 14 LTLAAVCIAVGA 25
          L ++A+CI VGA
Sbjct: 5  LIISAICICVGA 16


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 65 RGNGNINHENAPSRLESLEPDSEVELIP 92
          RGN  ++ +N+   + S+ P S +++ P
Sbjct: 25 RGNTWLSLDNSNMSMSSVGPQSPLDMKP 52


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 65 RGNGNINHENAPSRLESLEPDSEVELIP 92
          RGN  ++ +N+   + S+ P S +++ P
Sbjct: 25 RGNTWLSLDNSNMSMSSVGPQSPLDMKP 52


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)

Query: 51 NPESAQYYEQPQQKR 65
          NP SA YYE     R
Sbjct: 9  NPASANYYENKDGAR 23


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/13 (38%), Positives = 11/13 (84%)

Query: 13 YLTLAAVCIAVGA 25
          ++ ++A+C+ VGA
Sbjct: 4  FVIISAICVCVGA 16


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.130    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,725
Number of Sequences: 429
Number of extensions: 1260
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 110
length of database: 140,377
effective HSP length: 50
effective length of query: 60
effective length of database: 118,927
effective search space:  7135620
effective search space used:  7135620
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)