GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002196-TA|BGIBMGA002196-PA|undefined
         (77 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    26   0.052
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   1.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   1.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   2.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   7.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.052
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 20  SEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIERM 59
           SE P        N  I+DF H+R R +P+       +ER+
Sbjct: 309 SEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETGLERL 348



 Score = 19.8 bits (39), Expect = 3.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 26  TTNNFKNPGILDFLHSRKRDIPN 48
           T  N K    LD  H+R  +IPN
Sbjct: 291 TFRNTKKLQWLDTSHNRISEIPN 313


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 34  GILDFLHSRKRDIPNATAATVNIERMYIETEAATEN 69
           G  +F + R+R +P+  A  +++   Y  T    EN
Sbjct: 609 GFNEFYNQRRRWMPSTMANILDLLMDYEHTVKINEN 644


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 34  GILDFLHSRKRDIPNATAATVNIERMYIETEAATEN 69
           G  +F + R+R +P+  A  +++   Y  T    EN
Sbjct: 842 GFNEFYNQRRRWMPSTMANILDLLMDYEHTVKINEN 877


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 34  GILDFLHSRKRDIPNATAATVNIERMYIETEAATEN 69
           G  +F + R+R +P+  A  +++   Y  T    EN
Sbjct: 842 GFNEFYNQRRRWMPSTMANILDLLMDYEHTVKINEN 877


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 5   ELGNLLEKFLTVALSSEQPEKTTNN 29
           E+G + E    V LS  +PEK T +
Sbjct: 161 EVGGVEEAKGPVDLSKSEPEKKTES 185


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 46  IPNATAATVNIERM 59
           + +A A+ VNI+RM
Sbjct: 484 VNHAAASRVNIQRM 497


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178
Number of Sequences: 317
Number of extensions: 559
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 77
length of database: 114,650
effective HSP length: 46
effective length of query: 31
effective length of database: 100,068
effective search space:  3102108
effective search space used:  3102108
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)