GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002196-TA|BGIBMGA002196-PA|undefined
         (77 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   1.2  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   1.6  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    24   2.1  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    24   2.8  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    24   2.8  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    24   2.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   3.7  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    23   4.9  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    23   4.9  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    23   4.9  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    22   8.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    22   8.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    22   8.5  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    22   8.5  

>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 6   LGNLLEKFLTVALSSEQPEKT-TNNFKNPGILDFLHSRKRDIPNATAATVNIERMYIETE 64
           LG++ EK L VA S  Q +KT  +   +P + D + ++      A   +  IER  I+T 
Sbjct: 76  LGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTL 135

Query: 65  AATEN 69
              +N
Sbjct: 136 ITFDN 140


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 18  LSSEQPEKTTNNFKNPGILDFLHSR-KRDIPNATAAT 53
           LS E  ++  NN  N    DF H + + D PN    T
Sbjct: 406 LSLEYADEIRNNISNERTFDFTHYKAEYDFPNDHGTT 442


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 35  ILDFLHSRKRDIPNATAATVNIERMYIETEAATENHTEI 73
           +LDFL  ++     A+     ++RM +  E    N+ E+
Sbjct: 65  VLDFLDEQEAQEEPASLTPTELKRMVVRLEKTINNNQEL 103


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 11   EKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDI 46
            ++++TV   SE    TT N  NP +L ++    R I
Sbjct: 1094 DEYVTVVDESEIFADTTGNNANPYMLTYIRKEYRHI 1129


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 10  LEKFLTVALSSEQPEKTTNNFKNPG 34
           ++KF   A SSE P   T NF   G
Sbjct: 361 MQKFPANAASSESPPNATGNFLPSG 385


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 26  TTNNFKNPGILDFLHSRKRDI 46
           TT   KN  +L+ LHS++RD+
Sbjct: 518 TTPCKKNMSVLETLHSQQRDL 538


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 5/32 (15%)

Query: 8   NLLEKFLTVALSSEQPEKTTNNFKNPGILDFL 39
           NLL + L+VAL +++P+       +P +L+FL
Sbjct: 143 NLLRQVLSVALKAQKPD-----MDSPELLEFL 169


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 3   HRELGNLLEKFLTVALSSEQPEKTTNNFKNP 33
           HR+L   + KF++  +S+E   + +N +  P
Sbjct: 219 HRQLREPILKFISKTISTEDGREASNYYVAP 249


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 285

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/13 (61%), Positives = 13/13 (100%)

Query: 1  MVHRELGNLLEKF 13
          +V+R+LGNLLE++
Sbjct: 14 IVYRQLGNLLEQY 26


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 12  KFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVN 55
           K+L +   +E P      F +P I    +S K  IP  T   V+
Sbjct: 216 KYLGIPWDNEMPAAALEQFASPEINSTSYSLKPPIPLNTREKVH 259


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 39  LHSRKRDIPNATAATVNIERMYIETEAATENHTEIAG 75
           +HSR R +P      VNI   ++     + N  ++ G
Sbjct: 246 VHSRFRLLPETLFLAVNIIDRFLSLRVCSLNKLQLVG 282


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 25  KTTNNFKNPGILDFLHSRKRDIPNATAATVNIE 57
           K+  N K   +LDFL    R   N  +  + ++
Sbjct: 310 KSAQNLKGDSLLDFLFDYARSCQNTISYPIALQ 342


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 36  LDFLHSRKRDIPNATAATVNIERMYIETEAATENHTEIA 74
           L  L +   DIP   +   NI  M  ET +  + H E++
Sbjct: 69  LQELAASSADIPEVGSTLNNILSMRTETGSMAKAHEEVS 107


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 15  TVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIER 58
           T+ +    PE    N K  G    LH    DI  A  A +  E+
Sbjct: 188 TIVMPQNTPEIKWRNVKRLGANVLLHGANFDIAKAECARLAKEQ 231


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,459
Number of Sequences: 5004
Number of extensions: 11677
Number of successful extensions: 26
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 14
length of query: 77
length of database: 2,362,478
effective HSP length: 57
effective length of query: 20
effective length of database: 2,077,250
effective search space: 41545000
effective search space used: 41545000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)