GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002196-TA|BGIBMGA002196-PA|undefined
         (77 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436...    30   0.27 
06_01_0409 + 2926072-2926275,2926423-2926484,2926598-2926638,292...    29   0.48 
09_02_0141 - 4889020-4889191,4889401-4889675                           28   0.83 
06_01_0411 + 2939148-2939354,2939517-2939578,2939712-2939752,294...    27   1.9  
02_02_0177 + 7484526-7484723,7484913-7484974,7485606-7485646,748...    27   1.9  
01_05_0204 + 19246633-19246938,19247091-19247192,19247314-192474...    27   1.9  
02_05_1179 + 34761054-34761198,34761293-34761447,34761541-347617...    25   7.7  

>01_06_1153 -
           34942608-34942975,34943082-34943330,34943516-34943625,
           34944698-34944771,34945237-34945306,34945848-34945947,
           34946045-34946120,34946572-34946646,34947067-34947156,
           34947238-34947354,34947457-34947567,34947649-34947788,
           34947962-34948043,34948224-34948303,34948938-34949046,
           34949295-34949417,34949972-34950044,34950338-34950489,
           34951029-34951127,34952258-34952383
          Length = 807

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 25  KTTNNFKNPGILDFLHSRKRDIPNATAATVNIERMYIETEAAT 67
           K     ++P IL FLHS + ++P+  A    I   YI TE  T
Sbjct: 71  KRLRTVRHPNILSFLHSTEAEVPDGPAMKHTI---YIVTEPVT 110


>06_01_0409 +
           2926072-2926275,2926423-2926484,2926598-2926638,
           2927165-2927394
          Length = 178

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 7   GNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIERMYIETEAA 66
           GN +  F T+ +    P+  + +  NP + ++LH    DIP  T AT   E M  E+   
Sbjct: 59  GNDMRTFYTLVMVD--PDAPSPS--NPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRP 114

Query: 67  T 67
           T
Sbjct: 115 T 115


>09_02_0141 - 4889020-4889191,4889401-4889675
          Length = 148

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 18 LSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNI 56
          +++ Q  + T N  +   + +L+  K+D PNA AA V++
Sbjct: 25 VTTGQMLQPTTNLSSHHFIHYLNGTKKDYPNAVAAYVDV 63


>06_01_0411 +
           2939148-2939354,2939517-2939578,2939712-2939752,
           2941060-2941289
          Length = 179

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 7   GNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIERMYIETEAA 66
           GN +  F T+ +    P+  + +  +P + ++LH    DIP  TAA+   E M  E+   
Sbjct: 60  GNDMRTFYTLVMVD--PDAPSPS--DPNLREYLHWLVTDIPGTTAASFGQEVMCYESPRP 115

Query: 67  T 67
           T
Sbjct: 116 T 116


>02_02_0177 +
           7484526-7484723,7484913-7484974,7485606-7485646,
           7485845-7486101
          Length = 185

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 14  LTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIERMYIETEAAT 67
           L VA +    +    N  NP + ++LH    DIP +T AT   E +  E+   T
Sbjct: 60  LRVAYTLVMVDPDAPNPSNPTLREYLHWMVTDIPASTDATYGREVVCYESPNPT 113


>01_05_0204 +
           19246633-19246938,19247091-19247192,19247314-19247431,
           19247977-19247996,19248122-19248160,19248282-19248342,
           19248464-19248664,19248756-19249057,19249448-19249601,
           19249683-19249939,19250015-19250045,19251027-19251166,
           19252067-19252177,19253071-19253283
          Length = 684

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 20  SEQPEKTTNNF-KNPGILDFLHSRKRDIPNATAATVNIERMYIETEAATENH 70
           S+ P+KT     K+   +DF  + + D+PN  A   N + + +    AT N+
Sbjct: 446 SDAPKKTKKKRGKDEPDIDFSKALEHDMPNIFAPPKNSKSLLLPANRATSNN 497


>02_05_1179 +
           34761054-34761198,34761293-34761447,34761541-34761723,
           34761825-34762177,34762288-34762451,34762837-34762930,
           34763898-34763958
          Length = 384

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 27  TNNFKNPGILDFLHSRKRDIPNATAATVNI 56
           T NF +  +  +L   K+  PNA AA V++
Sbjct: 202 TLNFSSNHVARYLMGTKKSYPNAVAAYVDV 231


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,496
Number of Sequences: 37544
Number of extensions: 58987
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 7
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)