GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002196-TA|BGIBMGA002196-PA|undefined
         (77 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   1.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    22   2.7  
AY146746-1|AAO12061.1|  333|Anopheles gambiae odorant-binding pr...    21   6.3  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            21   6.3  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 36   LDFLHSRKRDIPNATAATVNIERMYIETEAATENHTEIAGT 76
            LD      +++PN     +N+ R   +    +EN TE + +
Sbjct: 1074 LDSCSDILQEVPNLNRDLINLFRQMPKVSELSENETEYSSS 1114


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 1   MVHRELGNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDI 46
           +  RE+ +L EK  T A+   + E T    +N  I  +L  +KR I
Sbjct: 278 LAEREMKDL-EKPKTEAVEYLKQENTLTRTRNQQIQKYLCEQKRKI 322


>AY146746-1|AAO12061.1|  333|Anopheles gambiae odorant-binding
           protein AgamOBP43 protein.
          Length = 333

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 55  NIERMYIETEAATE 68
           NI+RMY++ E+  +
Sbjct: 217 NIDRMYVQCESCAD 230


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 40   HSRKRDIPNATAATVNIERMYIETEAATENHT 71
            + R++  PN +    N+   Y  T  A  N T
Sbjct: 1223 NQRRQHQPNISLTHSNVRNSYQLTRVAPSNRT 1254


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,616
Number of Sequences: 2123
Number of extensions: 2531
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 516,269
effective HSP length: 52
effective length of query: 25
effective length of database: 405,873
effective search space: 10146825
effective search space used: 10146825
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)