GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002196-TA|BGIBMGA002196-PA|undefined
         (77 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical pr...    27   1.6  
AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-relat...    26   2.8  
AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin prote...    26   2.8  
AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin prote...    26   2.8  
Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    26   3.7  
U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical p...    26   3.7  
Z50874-3|CAA90773.1|  409|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z50874-2|CAA90772.1|  357|Caenorhabditis elegans Hypothetical pr...    25   4.8  
U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    25   6.4  

>Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical
           protein F01G10.9 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 1   MVHRELGNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIERMY 60
           M   E   L+E+       S   E   ++ K P  ++ + SRK   P +++A V+ +R Y
Sbjct: 126 MNDEEADRLIEEMYLKKKESHATESPEDSLKVP--VEVIESRKPLSPPSSSANVSKQRSY 183

Query: 61  IETEAATEN 69
             + +++ N
Sbjct: 184 TTSSSSSSN 192


>AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-related
           protein protein.
          Length = 732

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 7   GNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRD 45
           GN   +  T A   E+P K     K  G L F+  RK+D
Sbjct: 695 GNTTSRSCTTASEEEKPTKDEKKKKKKGFLSFM--RKKD 731


>AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin protein
           1, isoform b protein.
          Length = 732

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 7   GNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRD 45
           GN   +  T A   E+P K     K  G L F+  RK+D
Sbjct: 695 GNTTSRSCTTASEEEKPTKDEKKKKKKGFLSFM--RKKD 731


>AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin protein
           1, isoform d protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 7   GNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRD 45
           GN   +  T A   E+P K     K  G L F+  RK+D
Sbjct: 645 GNTTSRSCTTASEEEKPTKDEKKKKKKGFLSFM--RKKD 681


>Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical
           protein T02G6.2 protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 12  KFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIER 58
           + +TV   S+ P K T  +K    L+   S+KR  P+ + A + + R
Sbjct: 219 QMMTVRAGSQPPGKVTYQYKKREQLETWKSKKR-APSTSGAVITMVR 264


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
          protein T22A3.6 protein.
          Length = 594

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 2  VHRELGNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVNIERMY 60
          + +++GNL  KF +V   +++   ++ + K+P  L  L   K  +    A  +   R Y
Sbjct: 8  ITQKMGNLRSKFDSVHTHNQKVIYSSTSEKSPANLQLLEKIKEKLDEIDAQEMEANREY 66


>U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical
           protein C44B7.12 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 14  LTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIP 47
           L + LSS    KTT N++N     F + RKR +P
Sbjct: 290 LEICLSSNVYSKTTTNYRNS---HFNYWRKRGVP 320


>Z50874-3|CAA90773.1|  409|Caenorhabditis elegans Hypothetical
           protein R10E4.2b protein.
          Length = 409

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 6   LGNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVN 55
           L  +  K+  +A +    +K TNN K  G +DF      + P A AA V+
Sbjct: 123 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDF------ESPQAAAAAVD 166


>Z50874-2|CAA90772.1|  357|Caenorhabditis elegans Hypothetical
           protein R10E4.2a protein.
          Length = 357

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 6   LGNLLEKFLTVALSSEQPEKTTNNFKNPGILDFLHSRKRDIPNATAATVN 55
           L  +  K+  +A +    +K TNN K  G +DF      + P A AA V+
Sbjct: 97  LREMCSKYGNIASTKAIMDKATNNCKGYGFVDF------ESPQAAAAAVD 140


>U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical
           protein F14B8.6 protein.
          Length = 345

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 6   LGNLLEKFLTVALSSEQPEKTTNN 29
           LGN  + FL +  SS QP++   N
Sbjct: 109 LGNASDSFLLMTQSSNQPDRNNQN 132


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 35  ILDFLHSRKRDIPNATAATVNIERMYIETEAATEN 69
           ILD  H  K  +P A A      RM +E + A  N
Sbjct: 415 ILDECHRAKNLVPTAGAKPTKTGRMVLELQKALPN 449


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,069
Number of Sequences: 27539
Number of extensions: 58566
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 11
length of query: 77
length of database: 12,573,161
effective HSP length: 57
effective length of query: 20
effective length of database: 11,003,438
effective search space: 220068760
effective search space used: 220068760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)