GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002195-TA|BGIBMGA002195-PA|IPR000182|GCN5-related
N-acetyltransferase
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    45   7e-06

>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 64  VSDGF--EQSPAWFFVLIAELDGQVAGYALCNRAYSSWTGRA-VYVEDLWVSEXXXXXXX 120
           V+ GF  E +P  + V I E D Q AG A+    +S+WT R  +Y+EDL+V         
Sbjct: 43  VAFGFIDEVTPVAYGVFIEEND-QPAGMAIYFLNFSTWTSRVGIYLEDLYVRPQFRGKGY 101

Query: 121 XXXXXXXXXXXXXXXQVTRLDWHVLEDNAPALALYARLGAR 161
                             RLDW VL+ N  A+ +Y + GA+
Sbjct: 102 GSYLLSYLARESLRIGGRRLDWVVLDWNQRAIEVYEKAGAQ 142


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,676
Number of Sequences: 5004
Number of extensions: 18933
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 1
length of query: 204
length of database: 2,362,478
effective HSP length: 70
effective length of query: 134
effective length of database: 2,012,198
effective search space: 269634532
effective search space used: 269634532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)